Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01710 ATGAAAACAAAAACCCACTTAGCTCTTCACCTTTTGTTTGCACTTCTATTTCTTGCACCACCATTCCCTCACTCCTCCTCACTCCTATTCTCTGCTGCACTCACTGATCCCCAAGATTCATGTGTGCTGAAGTTCAACACAAGCCAATATGTGGCAATGGATGAGTGCACCGTAGTGAATGAGCATATTTACATGTGGGGTGAAGACGGGTTCCCGACCACATTGTGCTGTCGAAATGCTCTCACGATTGTGTCGAATGCATTGGCGACACAAGCACTGAGCTCGGGAGGACAAATATTCCTTTCCCAAGATCAATGGCAGCGTTGTTCGCAGTCATTTCACCCGCAACCAGGGTTGTCACTTGATTCATGTGGCTTCGACAACTTGTACCGAGGAAGTTCCATTTGCTCCAGTTTCATTTTGCAGGATGTTAGGACCCTACAACAGTACCAAGACGCATTCGGCAAATGCTCCCACTTCAACCAACCTTTTGGTCCATCTTGTGCAGATTGTACCAGTGGAATATCGAACGTGAGAGATACTTTGTATTCTCAAGTGGACAAACACAACAACGACACTGAAAGAGCCATATGTGGGGTAGCAGCTATTGTTGCTCTTGCAGCTGGCTCACCAAACGATCCTCTCGTCGACAAATTTTTACGATGCTTGCCACCTTCAGCTTCAGGAAACAAGAAAGGATCTCTGTGGAAAGCCTTGCTGAGTGTGCCAGTAGTTGTGATTGTGATATTGATTGTGGTTATTATGGTGAAATGTTTGTCGAAGAAGAAGGGTCGTAAACCGGTTGACTTGCAAGAGATCACTGCATGGTCTGGATTGTACTGGTTCTGCAAAGGGGAAATTGAGAATGCCATGAATTATGGTGGTCGAAAGATAAGCCTTGGAAGAGGAAGTGCAGGGCAGGTATATAGAGGCGTTCTACCCAGTGGTCAAATCGTGGCCATCAAGCATTTAACAAAGAGTAACACCTCTGAGTCCTTCACTCGTGAAATTGAAGGCCTTTCAAGGCTTCGCCATCCAAACTTGGTTTGTCTCTTTGGCTGCTGCATTGAAGGGGATGAGAGATATTTAGTCTATGAATTTTGTGCAAACGGGAATCTTGCTCAACATCTCTTACGAAGAGATAGTCACTTGACCTGGGAAACAAGAGTGAGAATTTTGAGAGATTGTTCGTTTGCACTCAAGTACCTCCACCATCATATGGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGACTGAGAAATACCAAGCGAAACTGTCAGATTTTGGACTGTCAAAGGTGATGGGAGTCAAAGAGAGCAAGGTTTTTACCGATGTACGAGGAACCATTGGGTACATGGATCCAGAATACATGAGTAATGCGAAGCTAACGTGTGCCAGTGATGTATACAGTTTTGGTATTGTTGCTTTGCAAATATTGTCTGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGACCAGCTCACAAGGAAGGCAAGAGATGTGAGTATGGGAAAGCGTCCATTGTCTGATTTTGAAGACCCACGGTTAAAAGGAAAGGTTGATAAAGCAGACTTTGAAGCCATCCTACAAATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGACCAACCATTGAGGTTGTTTTTGATGAATTGGACAAGGTCTGCATGGACACAGAAACCAAGATGAAGGCAAAGAAGGATGAGAGTTCATCATCAAACTCCACCCCCAGCTCCAAATCCTCCAAATCAGCTCCTCTTTGA 1788 0.4452 MKTKTHLALHLLFALLFLAPPFPHSSSLLFSAALTDPQDSCVLKFNTSQYVAMDECTVVNEHIYMWGEDGFPTTLCCRNALTIVSNALATQALSSGGQIFLSQDQWQRCSQSFHPQPGLSLDSCGFDNLYRGSSICSSFILQDVRTLQQYQDAFGKCSHFNQPFGPSCADCTSGISNVRDTLYSQVDKHNNDTERAICGVAAIVALAAGSPNDPLVDKFLRCLPPSASGNKKGSLWKALLSVPVVVIVILIVVIMVKCLSKKKGRKPVDLQEITAWSGLYWFCKGEIENAMNYGGRKISLGRGSAGQVYRGVLPSGQIVAIKHLTKSNTSESFTREIEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSFALKYLHHHMEGCVVHRDIKLTNILLTEKYQAKLSDFGLSKVMGVKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLKGKVDKADFEAILQIAVLCVAKSSKGRPTIEVVFDELDKVCMDTETKMKAKKDESSSSNSTPSSKSSKSAPL 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01710 595 MobiDBLite consensus disorder prediction 570 595 - -
Viun6g01710 595 Pfam SPARK 37 191 IPR043891 -
Viun6g01710 595 SMART serkin_6 294 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01710 595 SUPERFAMILY Protein kinase-like (PK-like) 286 559 IPR011009 -
Viun6g01710 595 Gene3D Transferase(Phosphotransferase) domain 1 368 589 - -
Viun6g01710 595 ProSiteProfiles Protein kinase domain profile. 294 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01710 595 Pfam Protein kinase domain 299 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01710 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Viun6g01710 595 MobiDBLite consensus disorder prediction 578 595 - -
Viun6g01710 595 FunFam probable receptor-like protein kinase At5g59700 368 579 - -
Viun6g01710 595 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 102 590 - -
Viun6g01710 595 Gene3D Phosphorylase Kinase; domain 1 257 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01710 Viun-Chr6 24724722 24728023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01710 300 583 Receptor kinase-like Gene Family AT1G51800 41.379 1.33e-56 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Viun6g01710 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01710 - - vum:124837890 970.304