Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01701 ATGGAGTCAATGAAGCAGAGGAACAAAGGAGGGAGTAGAAGGTCGAGAATTTCAGCACTGATTGTGGATGACGATGCTGTCGTTCGGAAAATCCACATGATGATGTTGGAGCGGTTGTTTAACATGGACGCAAAAACGGTTAGTGATGGAAATGAAGCAGTGGATATGCATCGATGTGGGGCAAATTTTGACATCATTTTCATGGACAAAGAAATGCCCATCATGGACGGTCACGAGGCCACAAAAGAGCTACGTGGTATGGGTGTTAAGTGCTTGATTGTGGGAATTACTACGCGTGCTAATGGGAAAGATGGTGAAGAATTTTTAGCTGCAGGATCCAACTATTGCTTTGAAAAGCCTCTTGATCGAACAAAGATTGAACGAGTCTTGCAAGACCATCCAAATTTTACTACAACTTGA 420 0.431 MESMKQRNKGGSRRSRISALIVDDDAVVRKIHMMMLERLFNMDAKTVSDGNEAVDMHRCGANFDIIFMDKEMPIMDGHEATKELRGMGVKCLIVGITTRANGKDGEEFLAAGSNYCFEKPLDRTKIERVLQDHPNFTTT 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01701 139 SMART REC_2 17 130 IPR001789 GO:0000160
Viun6g01701 139 ProSiteProfiles Response regulatory domain profile. 18 134 IPR001789 GO:0000160
Viun6g01701 139 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 132 - -
Viun6g01701 139 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Viun6g01701 139 Gene3D - 1 135 - -
Viun6g01701 139 CDD REC_hyHK_CKI1_RcsC-like 20 130 - -
Viun6g01701 139 SUPERFAMILY CheY-like 16 133 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01701 Viun-Chr6 24658199 24658816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01701 4 126 Response Regulator Gene Family AT3G04280 41.353 5.83e-28 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun6g01701 Response_reg 5.2e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01701 - - pvu:PHAVU_006G107500g 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01701 6 24658199 24658816 Viun6g01701 6 24658199 24658816 ECH