Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01694 ATGTTCAAGCTATCGCGCGTGCTTCATCTCACTTCCTCTTCTAGGCATAGGCTGTTGGAAGTGTTGTCGTCTAGGAATGTTGAAGTTGGAGACTTTCTGCGGAATCGGCGTGATTTTACCCATTCAGCTGGCATTTCTACTACTACAAACAATTATGCTGCTAAAGGGTATGCCTCGGATCGTATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCGGCATTTTCGTTGAGTCCTTGTCTTCCAACTTTTACTAAGTTGGATTCCGGGACTGTTGTAGTTGATCGACGTGGTTCAATGATGATGACTTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCAGCCACTGAAGTTGGTTCTTTGATAACTATGGGCTCTCAAGATTCCTCTGAATTTTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCGATTAAGCCTAATGCAAACAACAATGGATACTTTGTCTCATTGACTGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCCTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCAGCAATCCAGAGGCACAGTGGGCCCTCAAGGGAAGGGTGGCTCTCAAGTTTTAGATTTGGAATGGGAAAAATGA 732 0.429 MFKLSRVLHLTSSSRHRLLEVLSSRNVEVGDFLRNRRDFTHSAGISTTTNNYAAKGYASDRIFAPYTVYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSMMMTFMHSIGERKYDWEKRQRFALSATEVGSLITMGSQDSSEFFHDPSMLSSNAGQVRKSLSIKPNANNNGYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTACSFALPHIMGWDQITNQQSRGTVGPQGKGGSQVLDLEWEK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01694 243 SUPERFAMILY ssDNA-binding transcriptional regulator domain 59 222 IPR009044 GO:0003677|GO:0006355
Viun6g01694 243 Coils Coil 238 243 - -
Viun6g01694 243 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 37 243 IPR013742 GO:0003697|GO:0006355|GO:0006952
Viun6g01694 243 Gene3D Transcriptional Coactivator Pc4; Chain A 52 224 IPR009044 GO:0003677|GO:0006355
Viun6g01694 243 Pfam Whirly transcription factor 68 202 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01694 Viun-Chr6 24554550 24557709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01694 37 243 Whirly Transcription Factor Family AT1G71260 60.849 3.94e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Viun6g01694 Whirly 4.4e-54 CL0609