Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01690 ATGGAACCTAATGACAACCAACTCACCTCCTTCTTCCACCACCACCACCCTCACCACCACCATCACCACCAGCCCCAACCACCGCCGCACACCGCCGCACCCACAACAGCCTCTCCGACCAACGGCCTCTTGCCCAACGCCGACGCCTCACACATACTCTACCCTCACTCCGTCGCCTCTGCGGTCTCCTCGCAGCTCGAACCGGCCAAGAGGAAGCGGGGGCGGCCTAGGAAGTATGGCACGCCGGAGCAGGCTCTTGCCGCCAAGAAAGCCGCTACGTCTCAGTCGTTCTCCGCGGACAAGAAGCCCCACTCACCAACGTTCCCTTCTTCTTCATCTTTCACGTCCAAGAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTCATGCAACAAAGTAGGCGTGAAATGTGTATTCTCTCTGCGTCTGGTTCTATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACATATGAGGGTCGATTTGAGATTATTTCACTTACTGGATCTTACGTCCGTAATGAGATTGGAACTCGAACTGGTGGTCTAAGTGTATGTTTATCTAACACCGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGACAACAAGAAGGATTCTAGCCCAAAAGTTGATGCCTCTGCAAGTAAGTTACCACCACCTGTTAGTGAACCAGTATCAAGTTTAGGTTTCCGCCAATCAGTCGACTCTCCCAGTGGAAATCCAATCCGTGGAAATGATGATCATCAAGCCATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCAGGGGACGCCTCCCCGGTCCACCGACTGGGCTCGTCCAGATTCAAGAAATTCCAGTTTTGAGCTGACAGGTTTCCTATCTGCAGGAAGGACAGGTCATGGGTCGCACCAGTCTCCTGAGAATGGGGGCTATGACCAAATTCCTGATTGA 1074 0.5186 MEPNDNQLTSFFHHHHPHHHHHHQPQPPPHTAAPTTASPTNGLLPNADASHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATSQSFSADKKPHSPTFPSSSSFTSKKSHSFALGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNEIGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDSSPKVDASASKLPPPVSEPVSSLGFRQSVDSPSGNPIRGNDDHQAMGGSHFMIQQLGLQGTPPRSTDWARPDSRNSSFELTGFLSAGRTGHGSHQSPENGGYDQIPD 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01690 357 ProSiteProfiles PPC domain profile profile. 127 265 IPR005175 -
Viun6g01690 357 MobiDBLite consensus disorder prediction 308 357 - -
Viun6g01690 357 CDD DUF296 132 243 IPR005175 -
Viun6g01690 357 MobiDBLite consensus disorder prediction 271 288 - -
Viun6g01690 357 MobiDBLite consensus disorder prediction 88 116 - -
Viun6g01690 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 243 - -
Viun6g01690 357 MobiDBLite consensus disorder prediction 250 296 - -
Viun6g01690 357 MobiDBLite consensus disorder prediction 61 116 - -
Viun6g01690 357 Gene3D - 133 258 - -
Viun6g01690 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 281 IPR039605 GO:0003680
Viun6g01690 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 243 IPR005175 -
Viun6g01690 357 MobiDBLite consensus disorder prediction 1 48 - -
Viun6g01690 357 MobiDBLite consensus disorder prediction 308 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01690 Viun-Chr6 24527774 24533681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01690 46 357 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 50.746 1.51e-81 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01690 - - gmx:100816781 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01690 6 24527774 24533681 Viun6g01690 6 24527774 24533681 ECH