Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01689 ATGGAACCTAATGACAACCAACTCACCTCCTTCTTCCACCACCACCACCCTCACCACCACCATCACCACCAGCCCCAACCACCGCCGCACACCGCCGCACCCACAACAGCCTCTCCGACCAACGGCCTCTTGCCCAACGCCGACGCCTCACACATACTCTACCCTCACTCCGTCGCCTCTGCGGTCTCCTCGCAGCTCGAACCGGCCAAGAGGAAGCGGGGGCGGCCTAGGAAGTATGGCACGCCGGAGCAGGCTCTTGCCGCCAAGAAAGCCGCTACGTCTCAGTCGTTCTCCGCGGACAAGAAGCCCCACTCACCAACGTTCCCTTCTTCTTCATCTTTCACGTCCAAGAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTCATGCAACAAAGTAGGCGTGAAATGTGTATTCTCTCTGCGTCTGGTTCTATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACATATGAGGGTCGATTTGAGATTATTTCACTTACTGGATCTTACGTCCGTAATGAGATTGGAACTCGAACTGGTGGTCTAAGTGTATGTTTATCTAACACCGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGACAACAAGAAGGATTCTAGCCCAAAAGTTGATGCCTCTGCAAGTAAGTTACCACCACCTGTTAGTGAACCAGTATCAAGTTTAGGTTTCCGCCAATCAGTCGACTCTCCCAGTGGAAATCCAATCCGTGGAAATGATGATCATCAAGCCATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCAGGGGACGCCTCCCCGGTCCACCGACTGGGCTCGTCCAGATTCAAGAAATTCCAGTTTTGAGCTGACAGGAAGGACAGGTCATGGGTCGCACCAGTCTCCTGAGAATGGGGGCTATGACCAAATTCCTGATTGA 1059 0.5194 MEPNDNQLTSFFHHHHPHHHHHHQPQPPPHTAAPTTASPTNGLLPNADASHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATSQSFSADKKPHSPTFPSSSSFTSKKSHSFALGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNEIGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDSSPKVDASASKLPPPVSEPVSSLGFRQSVDSPSGNPIRGNDDHQAMGGSHFMIQQLGLQGTPPRSTDWARPDSRNSSFELTGRTGHGSHQSPENGGYDQIPD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01689 352 ProSiteProfiles PPC domain profile profile. 127 265 IPR005175 -
Viun6g01689 352 Gene3D - 133 258 - -
Viun6g01689 352 CDD DUF296 132 243 IPR005175 -
Viun6g01689 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 290 IPR039605 GO:0003680
Viun6g01689 352 MobiDBLite consensus disorder prediction 271 288 - -
Viun6g01689 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 243 - -
Viun6g01689 352 MobiDBLite consensus disorder prediction 88 116 - -
Viun6g01689 352 MobiDBLite consensus disorder prediction 1 48 - -
Viun6g01689 352 MobiDBLite consensus disorder prediction 61 116 - -
Viun6g01689 352 MobiDBLite consensus disorder prediction 304 345 - -
Viun6g01689 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 243 IPR005175 -
Viun6g01689 352 MobiDBLite consensus disorder prediction 250 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01689 Viun-Chr6 24527768 24533565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01689 46 352 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 50.448 2.72e-83 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01689 - - gmx:100816781 546.969