Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01686 ATGCAAAACCAGTGCGGGAAGCTTCACACTTCATCACCTTCCTCCACACAAAAACCAGAACCAAGCTCCTCCGCAAACGCCGTCGTATCAGAAACATCTCTGGAACAAAAGAAAGACGAGCCAAGATCAGAAGAAGCTACGAACATATCCACCATGCGTAGGCCCAGGGGTCGCCCTCTAGGCTCCAAGAACAAGCCCAAACCGGCATCCCTCATGAGCCGAGACACCAAAAATCTTATCGAAAGTCACATGCTGGAGATAGCAAGTGGAAGCGACATCATCACTAACCTGGTCCAGTTCGCTGGAAGGAAAAAACGAGGTTTTTGTGTTCTGAGCGCCATTGGGAGCATTAGGAATGTGTCTCTCCAGCAGTCGTTGATCCCTGATACCATCATGACACTGGAAGGTCAGTTGCAGATACTATCGTTGAAAGGTTCGTTTTTGCCCGGAGCAACACCGCCTACGTTGTCGGTTTATCTGGCCGGAGCTAAGGGACAAGTTGTCGGAGGCAGAGTGGTGGGTCCGTTGGTGGCATCAGGAACAGTTTTCATAGTTTTGGCTGCGTTTTCTAATGCTGGATTTGACAGATTACCCTTTGTGTTTGAGGGTGGCGAAGAGGCTTCATCCTCTAATCATTAA 639 0.493 MQNQCGKLHTSSPSSTQKPEPSSSANAVVSETSLEQKKDEPRSEEATNISTMRRPRGRPLGSKNKPKPASLMSRDTKNLIESHMLEIASGSDIITNLVQFAGRKKRGFCVLSAIGSIRNVSLQQSLIPDTIMTLEGQLQILSLKGSFLPGATPPTLSVYLAGAKGQVVGGRVVGPLVASGTVFIVLAAFSNAGFDRLPFVFEGGEEASSSNH 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01686 212 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 191 IPR005175 -
Viun6g01686 212 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 207 IPR014476 GO:0003680
Viun6g01686 212 MobiDBLite consensus disorder prediction 1 32 - -
Viun6g01686 212 Gene3D - 81 200 - -
Viun6g01686 212 MobiDBLite consensus disorder prediction 33 51 - -
Viun6g01686 212 MobiDBLite consensus disorder prediction 1 73 - -
Viun6g01686 212 PIRSF ESCAROLA 1 212 IPR014476 GO:0003680
Viun6g01686 212 ProSiteProfiles PPC domain profile profile. 77 210 IPR005175 -
Viun6g01686 212 CDD DUF296 83 163 IPR005175 -
Viun6g01686 212 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01686 Viun-Chr6 24510026 24510664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01686 53 202 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 53.595 1.30e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01686 - - var:108344319 351.288