Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01685 ATGAGTTCCTCATTCTGTCACACCCACTACTCCCTTCCTTTCAACGAAAACGACTCTCAAGAAATGCCGCTTTACGAAGTTCTCGCTCAGGCTGCTGCCGACACAACAACATCATCGTTATCGTTATCTCCGGTGTCTCATGGTTCAAGTGTTGCCGTTGCCGTTGCCGAAGCAGAGGTTTCGATTTCGTACAGAGGGGTTCGGCGGAGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGACTCCACGAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCTCTGGCTTACGACCAGGCTGCGTTGGCCATGCGAGGCTCCATGGCAGTGCTCAATTTCCCAGCTGAGATGGTTTGGCAGTCGCTCCGGAAAATGGAGTATGGTTTTGACGAAGGGTGTTCCCCTGTTCTGGAGTTGAAAAAGAGACACTCCATTAATAGAAAATGGGAGCGGAACAAGCTGAAGAAGAAGGTGCAGGACGAAGCAGGGGTTTCCCAAAATGTGGTGGTGTTGGAGGACTTAGGAACAGAGTATTTGGAACATCTTCTTAGTCTCTCGCTGGATATGAATGCTTCTTAG 600 0.5183 MSSSFCHTHYSLPFNENDSQEMPLYEVLAQAAADTTTSSLSLSPVSHGSSVAVAVAEAEVSISYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPAEMVWQSLRKMEYGFDEGCSPVLELKKRHSINRKWERNKLKKKVQDEAGVSQNVVVLEDLGTEYLEHLLSLSLDMNAS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01685 199 Gene3D AP2/ERF domain 63 123 IPR036955 GO:0003700|GO:0006355
Viun6g01685 199 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Viun6g01685 199 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Viun6g01685 199 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Viun6g01685 199 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Viun6g01685 199 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Viun6g01685 199 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
Viun6g01685 199 FunFam Ethylene-responsive transcription factor 2 63 123 - -
Viun6g01685 199 PANTHER DNA-BINDING DOMAIN 41 191 IPR044808 GO:0003700|GO:0009873
Viun6g01685 199 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01685 Viun-Chr6 24499173 24499908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01685 12 193 AP2-EREBP Transcription Factor Family AT3G23240 54.891 3.21e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun6g01685 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01685 K14516 - gmx:100787732 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01685 6 24499173 24499908 Viun7g02558 7 29455439 29456528 ECH
Viun1g02099 1 32319361 32320021 Viun6g01685 6 24499173 24499908 ECH
Viun7g01389 7 17337987 17338616 Viun6g01685 6 24499173 24499908 ECH
Viun6g01685 6 24499173 24499908 Viun6g01685 6 24499173 24499908 ECH
Viun6g01685 6 24499173 24499908 Viun7g01394 7 17589359 17590416 PCT