Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01684 ATGGAGCAATCGCTTTTGGATGACATAATCAATCGTCTCCTCGAAGTCCGTACCCGACCCGGGAAGCAGGTCCAGCTGTCGGAGTCCGAGATCCGTCAACTCTGCGTCGTTTCCAGAGACATTTTCCTGCAACAACCTAATTTATTGGAGCTCGAAGCGCCTATTAAGATTTGTGGTGATGTACATGGCCAATATTCTGATCTCTTGAGGCTTTTTGAGTACGGTGGATTACCTCCTGAAGCCAACTACTTATTTTTGGGGGATTACGTGGATCGAGGGAAGCAGAGTTTAGAAACAATTTGCCTTCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTCCTGTTACGGGGAAACCATGAATGTGCTTCTATAAACCGGATATATGGATTTTATGATGAGTGCAAGAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGAGTGCTTCAACTGCCTGCCCGTGGCAGCCCTTGTTGATGAAAAGATTTTATGTATGCACGGAGGACTTTCTCCTGACTTACTTAATTTGGATCAGATTAGAAATATACAGCGGCCCACAGATGTTCCTGATACAGGTTTGCTTTGTGATCTCCTTTGGTCTGACCCAAGCAAAGAAGTTCAAGAATGGGGAATGAATGATAGAGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCACATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCCGGTGCTATGATGAGTGTTGACGAGACACTGATGTGCTCTTTCCAAATATTAAAACCAGCTGATAAAAAACCAAAGCTCAATTTTGGAAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCAGGTGTAAAGTCCTTCCTGGGAGCGAAAGCATGA 981 0.4271 MEQSLLDDIINRLLEVRTRPGKQVQLSESEIRQLCVVSRDIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALVDEKILCMHGGLSPDLLNLDQIRNIQRPTDVPDTGLLCDLLWSDPSKEVQEWGMNDRGVSYTFGADKVSEFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKPKLNFGSTTTAKPGNSPAGVKSFLGAKA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01684 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Viun6g01684 326 Gene3D - 1 305 IPR029052 -
Viun6g01684 326 SUPERFAMILY Metallo-dependent phosphatases 18 299 IPR029052 -
Viun6g01684 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 299 - -
Viun6g01684 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Viun6g01684 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Viun6g01684 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Viun6g01684 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Viun6g01684 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Viun6g01684 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Viun6g01684 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Viun6g01684 326 MobiDBLite consensus disorder prediction 302 326 - -
Viun6g01684 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Viun6g01684 326 CDD MPP_PP1_PPKL 6 294 - -
Viun6g01684 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Viun6g01684 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Viun6g01684 326 FunFam Serine/threonine-protein phosphatase 52 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01684 Viun-Chr6 24492646 24496928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01684 55 240 Calmodulin-binding Proteins AT5G63870 31.674 7.80e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01684 K06269 - gmx:100799218 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01684 6 24492646 24496928 Viun7g02544 7 29268058 29271860 ECH
Viun6g01684 6 24492646 24496928 Viun6g01684 6 24492646 24496928 ECH