Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01683 ATGCACCAAGAAGAAGCAACCCTCAAAAAACAACAATACCAAGCGTTGGAAGAAATCGGCCGAGGCAAATTCGCCACCGTCTTCCGCTGCTTCCACCGCTCCTCCAACCAATTCTACGCTCTCAAACTCATCAACCACCGCCTCCTCACCGACGCCACCGACCGCCACTGCCTCGAAGTGGAGGCCAAGGCCATGACCTTCCTCTCTCCCCACCCCAACATTCTCAAAATCATCGACGCCTTCCAAGACGCCCACACCTCCACCATCGTTCTCCAGCTCTGCCAGCCCCGCACCCTCTTCGACCGCATCGCCGACGGCCCTCTACCGGAGTCCCACGCCGCCTCCCTCACCAAACAGCTCCTCGAAGCCCTCACGCACTGCCACGCGCTCGGACTCGCCCACAGAGACATCAAACCCGAAAACCTCTTGTTCGACGAAGCCAACAACCTTAAACTCTCCGACTTCGGCTCCGCCGAGTGGTTCGGCGAGGGCCGGAGCATGCGTGGTGTGGTGGGCACCCCTTATTACGTGGCGCCGGAAGTGATCATGGGGAGAGACTACGACGAGAAAGTTGATGTTTGGAGCTGTGGGGTTATTCTTTATGCAATGTTGAGTGGCATTCCACCCTTCTATGGCGACTCTGCTGCTCAAATTTTTGAAGCTGTTTTAAGGGCTAATCTTAGGTTTCCTTCCACAGTTTTTAGGTCTGTGTCTGCTCAGGCTAAGGATCTTCTCAGGAAGATGATTTGTAGAGACCCCTCTCGACGTATCTCTGCGCACCAAGCATTGAGACATCCATGGATTTTGAGTGCTGATCTCTCTTGA 825 0.5491 MHQEEATLKKQQYQALEEIGRGKFATVFRCFHRSSNQFYALKLINHRLLTDATDRHCLEVEAKAMTFLSPHPNILKIIDAFQDAHTSTIVLQLCQPRTLFDRIADGPLPESHAASLTKQLLEALTHCHALGLAHRDIKPENLLFDEANNLKLSDFGSAEWFGEGRSMRGVVGTPYYVAPEVIMGRDYDEKVDVWSCGVILYAMLSGIPPFYGDSAAQIFEAVLRANLRFPSTVFRSVSAQAKDLLRKMICRDPSRRISAHQALRHPWILSADLS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01683 274 FunFam Maternal embryonic leucine zipper kinase 2 273 - -
Viun6g01683 274 Gene3D Transferase(Phosphotransferase) domain 1 97 274 - -
Viun6g01683 274 SUPERFAMILY Protein kinase-like (PK-like) 8 270 IPR011009 -
Viun6g01683 274 PIRSF ILK 2 263 - -
Viun6g01683 274 CDD STKc_CAMK 12 267 - -
Viun6g01683 274 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01683 274 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01683 274 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Viun6g01683 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 268 - -
Viun6g01683 274 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01683 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Viun6g01683 274 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01683 Viun-Chr6 24485312 24486439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01683 13 268 EF-hand Containing Proteins AT1G50700 40.769 6.88e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun6g01683 Pkinase 2.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01683 - K08794 gmx:547573 421.779