Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01674 ATGAAGACTCCTTGCTGTGAGAGCATGGGAATGAAGAAGGGACCTTGGACTGCAGAGGAAGATCAGATATTGGTTTCTCATATTCAACGATATGGCCATGGCAACTGGCGTGCCCTTCCTAAACAAGCTGGATTGTTAAGGTGTGGCAAGAGTTGCAGGCTTCGTTGGATAAATTACCTGAGGCCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAGCTGCATGAAATTCTTGGAAATAGGTGGTCTGCTATAGCGACAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATCCAAAAAAGTAGAGTGCATATAAATGGCAATGCTTCATCGCATATCTTGCAAGAGGCTCAAGCAAATAGTTCGTCAAGTTCAAGTGCAGTTTCTAGTGTCTATGGAGATGTAATGCTTGACAATTACGGTTTACCCTCAAGGAAGAATCCAATCAATCCACCTATTGTAGGTACTGGCTTTTATGGTGCAGTCTCCTCAGATACTTTTGGAGAAACTGAGGACAATCATGGTTCTTGTCAGCTAAGCGAAGAAATGGAATTTTGGTACAATATATTCGTCAAATCAGGGCAAACATCATGA 645 0.4171 MKTPCCESMGMKKGPWTAEEDQILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHEILGNRWSAIATSLPGRTDNEIKNFWHTHLKKRIQKSRVHINGNASSHILQEAQANSSSSSSAVSSVYGDVMLDNYGLPSRKNPINPPIVGTGFYGAVSSDTFGETEDNHGSCQLSEEMEFWYNIFVKSGQTS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01674 214 SMART sant 65 113 IPR001005 -
Viun6g01674 214 SMART sant 12 62 IPR001005 -
Viun6g01674 214 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Viun6g01674 214 CDD SANT 68 111 IPR001005 -
Viun6g01674 214 CDD SANT 15 60 IPR001005 -
Viun6g01674 214 SUPERFAMILY Homeodomain-like 9 107 IPR009057 -
Viun6g01674 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Viun6g01674 214 Gene3D - 67 141 - -
Viun6g01674 214 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 142 - -
Viun6g01674 214 FunFam MYB-related transcription factor 12 65 - -
Viun6g01674 214 Gene3D - 12 65 - -
Viun6g01674 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Viun6g01674 214 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Viun6g01674 214 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Viun6g01674 214 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01674 Viun-Chr6 24405193 24407159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01674 2 208 MYB Transcription Factor Family AT2G31180 47.679 1.46e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun6g01674 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01674 K09422 - gmx:102663040 367.081