Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01634 ATGATGACTAGTGCTATGGAGGCAGAGCGTGACAAGTACAAGATGATCGATTTCGAAGAAACCGAGTTGCGACTCGGGTTGCCGCTGAGTGCAAACGACGGCGAGTCCACGCTCATCAGAAACACTTCCGGCGGCTCCTTTACCGGAAAGAGAGGGTTTTCCGATACAACCAGCGGTAGCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAACAATGTCTCCGCCTCTTCCTCTTCTGAAATCGCCAAAGAGAACAACGCTTCCGCTGCTGCTGCTGCTAACATCACTACACCTTCTCCTCCTCCTGTCAAGGACCCAGCAAAGCCACCTGCAAAGGCACAAGTGGTGGGTTGGCCTCCTGTGAGGTCATTCAGAAAGAACATCGTTAACAACAATGTTCAAAAGGGTAGTAACAGTAACAGTAACAGTAACAACATCAAAGAGGGGGTAAAAGGTAGCAGCAGCAACAGTGGGAACATAAACATAGGAGCAGCTTTTGTTAAGGTGAGCATGGACGGTGCTCCCTATCTTCGTAAGGTAGATCTGAAGGTGTACAAGAGCTACCAAGAGCTGTCGGATTCCCTTGCAAAAATGTTCAGTTCATTCACCATTGACAAGTGTGGATCCCAAGGCATGAAAGACTTCATGAACGAGACCAAATTGATTGATTTTCTCAACGGCTCTGATTACGTACCCACCTACGAAGACAAAGATGGAGACTGGATGCTCGTCGGTGATGTACCCTGGGAAATGTTCGTGGAATCCTGCAAGCGCCTGCGTATTATGAAAGGATCTGAGGCAATCGGGCTAGCACCGAGAGCAGTGGAAAAGTGCAGGAACAGAAGCTAG 852 0.4859 MMTSAMEAERDKYKMIDFEETELRLGLPLSANDGESTLIRNTSGGSFTGKRGFSDTTSGSVDLKLNLSSTSNNVSASSSSEIAKENNASAAAAANITTPSPPPVKDPAKPPAKAQVVGWPPVRSFRKNIVNNNVQKGSNSNSNSNNIKEGVKGSSSNSGNINIGAAFVKVSMDGAPYLRKVDLKVYKSYQELSDSLAKMFSSFTIDKCGSQGMKDFMNETKLIDFLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCRNRS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01634 283 Gene3D - 160 277 - -
Viun6g01634 283 SUPERFAMILY CAD & PB1 domains 164 264 - -
Viun6g01634 283 Pfam AUX/IAA family 20 274 IPR033389 -
Viun6g01634 283 ProSiteProfiles PB1 domain profile. 165 265 IPR000270 GO:0005515
Viun6g01634 283 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 270 IPR003311 GO:0005634|GO:0006355
Viun6g01634 283 MobiDBLite consensus disorder prediction 34 55 - -
Viun6g01634 283 MobiDBLite consensus disorder prediction 31 55 - -
Viun6g01634 283 MobiDBLite consensus disorder prediction 90 115 - -
Viun6g01634 283 FunFam Auxin-responsive protein 160 275 - -
Viun6g01634 283 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01634 Viun-Chr6 24156320 24158860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01634 169 273 B3 DNA Binding Superfamily AT4G23980 32.381 2.52e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun6g01634 AUX_IAA 6.8e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01634 K14484 - gmx:100796888 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01634 6 24156320 24158860 Viun6g01634 6 24156320 24158860 ECH