Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01626 ATGGAGTTTCCACCGAACCTTTTGCCAGACGAAGCGAGCCCAGAATGGTTAAACAAAGGAGACAATGCGTGGCAGTTAATGGCGGCGACGGTGGTGGGTCTACAAAGCATTCCAGGGCTGGTTATTCTCTACGGAAGCCTCGTCAAAAAAACATGGGCCATTAACTCCGCTTTCATGGCCTTCTACGCCTTCGCCGCGGTTCTTCTCTGCTGGGTGGCGTGGGGTTTCCGCATGTCATTCGGCGAGAAAATGGTGTTCTTCTTGGGGAAACCAGGGGCGGCGCTGGACCAGGAGTTTCTTCTGGGGAAAGCGTTTCTGGGGCTCTTTCCCACCGCCACCATGGTGTTTTTTCAGGGCATGTTTGCGGCGATCACTTTGATCCTCATAGCTGGTGCGTTACTTGGGAGAATGAACATCCTTGCGTGGATGTTGTTCGTTCCTCTTTGGGTTACTTTTTCGTACACCGTTACTGCGTTTAGCATCTGGTGCCCCGAAGGGTGGTTGGCGAAGCTTGGAGTCATTGATTTCTCCGGTGGATATGTCATTCACCTCTCCGCTGGAGTTGCCGGTTACACTGCAGCTTATTGGGTGGGTCCAAGATGTGAAAAGGAGAGAGAAAGGTTTCCGTCAAACAACATGATCGTAGGGCTTGCCGGCGCCGGCCTGGTTTGGATGGGTTGGAGTGGGTTCAATGGTGGTGGTCCGTTCGTGGTGGGCACAGTGGCCTCTCTGGCCGTCCTTAACACACACGTGTGCGCCGCCGCTAGCATCATGGTGTGGGTTCTACTTGACACTTTCTACTTCGGTAAACCCACCGTGTTTGGCGCCATACAAGGCATGATCACCGGCCTCGTTTGCATCACACCTGCTGCAGGAGTTGTGCAGGGGTGGGCGGCGATCTTGATGGGTTTGATCTCAGGAAGCGTTCCCTGGTACACAATGATGATCCTCCACAACAAGGTACCTTTCTTGAACCAAATCGACGACCCCATGGCGGTGTTCCACACCCACGCCGTCGCCGGTGCTCTCGGCGGAATCCTCACCGGCGTCTTCGCCGTGCCTAAACTCTGCCGTCTCTTCTACATGGTCCCCGATTGGGAAAAATACATTGGCCTGGCTTATGGCCTCCAGAACGGTGCAACTGGAGCGGGTTTGAGACAAATGGGGATCCAAGTCGGAGCCATAGTTTTCGTCGTCATCTTCAACTTCGTCACGACAAGCTTGATTTGCTTGGTGGTGGGGGCCTTGGTGCCTCTCAGGCTTCACACCGATGCGCTTCAAATGGGTGACAAGGCAGTGCATGGAGAAGAGGCTTTCGCTTTGAATAATGCTGACCCTGCCAAGTTTGAGAACCTCAAGCACAACAAAGTTTATGATACTCAAGACTTTTCCTTCGTTACAAACCCAAGACCATTGAGTCAACTTCAAATGGTATGA 1437 0.531 MEFPPNLLPDEASPEWLNKGDNAWQLMAATVVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVAWGFRMSFGEKMVFFLGKPGAALDQEFLLGKAFLGLFPTATMVFFQGMFAAITLILIAGALLGRMNILAWMLFVPLWVTFSYTVTAFSIWCPEGWLAKLGVIDFSGGYVIHLSAGVAGYTAAYWVGPRCEKERERFPSNNMIVGLAGAGLVWMGWSGFNGGGPFVVGTVASLAVLNTHVCAAASIMVWVLLDTFYFGKPTVFGAIQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMILHNKVPFLNQIDDPMAVFHTHAVAGALGGILTGVFAVPKLCRLFYMVPDWEKYIGLAYGLQNGATGAGLRQMGIQVGAIVFVVIFNFVTTSLICLVVGALVPLRLHTDALQMGDKAVHGEEAFALNNADPAKFENLKHNKVYDTQDFSFVTNPRPLSQLQMV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01626 478 Gene3D Ammonium transporter AmtB like domains 8 457 IPR029020 -
Viun6g01626 478 PRINTS Rhesus blood group protein signature 338 354 IPR002229 GO:0005886
Viun6g01626 478 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005886
Viun6g01626 478 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Viun6g01626 478 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005886
Viun6g01626 478 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005886
Viun6g01626 478 Pfam Ammonium Transporter Family 23 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Viun6g01626 478 FunFam Ammonium transporter 6 442 - -
Viun6g01626 478 SUPERFAMILY Ammonium transporter 16 421 - -
Viun6g01626 478 PANTHER AMMONIUM TRANSPORTER MEP2 6 445 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01626 Viun-Chr6 24093634 24095227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01626 112 462 Inorganic Solute Cotransporters AT2G38290 54.131 4.42e-124 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01626 K03320 - gmx:100782944 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01626 6 24093634 24095227 Viun6g01626 6 24093634 24095227 ECH