Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01618 ATGGAGGGTCTTTTGGTTTTCAAAAATGGGTGGCAGGAATTTGTGAAGGAGAAAAATCTAGAAGAAGGGGACTTTTTGGTTTTTCAGTATGATGGCAAAACTACGTTTACTGTGAAGATATTTGCGAAAACTGGGTGCAGGAAAGTGGCTGCATCTCCAAGCCGTGTAAAAGTTGTTCCCATTGTGAATTTGGAAGAAGATTCTGATGAGGATAGTTATAAAATCCAGAGCAATGGTGTACGGAAACGTCCACTGCCTAGTTCCAAAGCAAATGTGAAATCAGAGGGTGCATGTCCATTCGAAGGAGCTCAGCGCAAATCAAAAAGAGTGAAGGAAGGAAAAGATAAAACGAATGACGAGAAACCTGCTCTTGCAAAGCATGTTCCACTGGAGAATGCTCATTTTCAAATATGTTTTACTTCTCGATATAAACTGAAAAGAGTGGAACTTCCTAGAAAATTGCTCAAAATGAGGAATATCAAGCTGCTAAAAAATATAACTCTCAGGGATGAGAATGACGAGTCATGGCCGGTGCTGATCAATTCTAGTAATGATCGTAATTATCTGGGAAGTGGATGGTTGACTTTTAAGAAGAATAAAAACATTCAAGAAGGCTCTCGGTGTGATTTTCAATTTGTTGTTAACAAATCAAATATGGCCATAGAACTGCTTGTGCACGTGATATCGAAGATAAGTAAATAG 702 0.3875 MEGLLVFKNGWQEFVKEKNLEEGDFLVFQYDGKTTFTVKIFAKTGCRKVAASPSRVKVVPIVNLEEDSDEDSYKIQSNGVRKRPLPSSKANVKSEGACPFEGAQRKSKRVKEGKDKTNDEKPALAKHVPLENAHFQICFTSRYKLKRVELPRKLLKMRNIKLLKNITLRDENDESWPVLINSSNDRNYLGSGWLTFKKNKNIQEGSRCDFQFVVNKSNMAIELLVHVISKISK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01618 233 CDD B3_DNA 140 224 IPR003340 GO:0003677
Viun6g01618 233 SUPERFAMILY DNA-binding pseudobarrel domain 5 48 IPR015300 -
Viun6g01618 233 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
Viun6g01618 233 MobiDBLite consensus disorder prediction 102 119 - -
Viun6g01618 233 PANTHER B3 DOMAIN-CONTAINING 2 217 - -
Viun6g01618 233 SMART B3_2 135 231 IPR003340 GO:0003677
Viun6g01618 233 Pfam B3 DNA binding domain 5 43 IPR003340 GO:0003677
Viun6g01618 233 Pfam B3 DNA binding domain 141 228 IPR003340 GO:0003677
Viun6g01618 233 Gene3D - 2 46 IPR015300 -
Viun6g01618 233 Gene3D - 128 230 IPR015300 -
Viun6g01618 233 MobiDBLite consensus disorder prediction 73 119 - -
Viun6g01618 233 CDD B3_DNA 6 41 IPR003340 GO:0003677
Viun6g01618 233 ProSiteProfiles B3 DNA-binding domain profile. 133 227 IPR003340 GO:0003677
Viun6g01618 233 SUPERFAMILY DNA-binding pseudobarrel domain 130 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01618 Viun-Chr6 24051335 24052960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01618 5 229 B3 DNA Binding Superfamily AT5G66980 27.843 4.22e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun6g01618 B3 5.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01618 - - var:108345771 363.999