Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01616 ATGGAGGGGCTTCCACTAGAATTCTTCAAAGTTTTTCTCATCCAGAAAGGTTCTACGCAGTTGCAAATACCAAGATCTTTTACCAAGTTTTTTAATGGAATCGCACCATGTAAGGTCGTTGTTGAAGAACACGGTGGAAAATATTGGGATGTTAAGTTGGAAAAAATGGAGGGTCTTTTGGTTTTCAAAAATGGGTGGCAGGAATTTGTGAAGGAGAAAAATCTAGAAGAAGGGGACTTTTTGGTTTTTCAGTATGATGGCAAAACTACGTTTACTGTGAAGATATTTGCGAAAACTGGGTGCAGGAAAGTGGCTGCATCTCCAAGCCGTGTAAAAGTTGTTCCCATTGTGAATTTGGAAGAAGATTCTGATGAGGATAGTTATAAAATCCAGAGCAATGGTGTACGGAAACGTCCACTGCCTAGTTCCAAAGCAAATGTGAAATCAGAGGGTGCATGTCCATTCGAAGGAGCTCAGCGCAAATCAAAAAGAGTGAAGGAAGGAAAAGATAAAACGAATGACGAGAAACCTGCTCTTGCAAAGCATGTTCCACTGGAGAATGCTCATTTTCAAATATGTTTTACTTCTCGATATAAACTGAAAAGAGTGGAACTTCCTAGAAAATTGCTCAAAATGAGGAATATCAAGCTGCTAAAAAATATAACTCTCAGGGATGAGAATGACGAGTCATGGCCGGTGCTGATCAATTCTAGTAATGATCGTAATTATCTGGGAAGTGGATGGTTGACTTTTAAGAAGAATAAAAACATTCAAGAAGGCTCTCGGTGTGATTTTCAATTTGTTGTTAACAAATCAAATATGGCCATAGAACTGCTTGTGCACGTGATATCGAAGATAAGTAAATAG 867 0.3864 MEGLPLEFFKVFLIQKGSTQLQIPRSFTKFFNGIAPCKVVVEEHGGKYWDVKLEKMEGLLVFKNGWQEFVKEKNLEEGDFLVFQYDGKTTFTVKIFAKTGCRKVAASPSRVKVVPIVNLEEDSDEDSYKIQSNGVRKRPLPSSKANVKSEGACPFEGAQRKSKRVKEGKDKTNDEKPALAKHVPLENAHFQICFTSRYKLKRVELPRKLLKMRNIKLLKNITLRDENDESWPVLINSSNDRNYLGSGWLTFKKNKNIQEGSRCDFQFVVNKSNMAIELLVHVISKISK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01616 288 MobiDBLite consensus disorder prediction 128 174 - -
Viun6g01616 288 Gene3D - 183 285 IPR015300 -
Viun6g01616 288 Gene3D - 5 101 IPR015300 -
Viun6g01616 288 MobiDBLite consensus disorder prediction 157 174 - -
Viun6g01616 288 ProSiteProfiles B3 DNA-binding domain profile. 188 282 IPR003340 GO:0003677
Viun6g01616 288 SUPERFAMILY DNA-binding pseudobarrel domain 8 101 IPR015300 -
Viun6g01616 288 Pfam B3 DNA binding domain 8 98 IPR003340 GO:0003677
Viun6g01616 288 Pfam B3 DNA binding domain 196 283 IPR003340 GO:0003677
Viun6g01616 288 CDD B3_DNA 195 279 IPR003340 GO:0003677
Viun6g01616 288 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Viun6g01616 288 CDD B3_DNA 8 96 IPR003340 GO:0003677
Viun6g01616 288 SUPERFAMILY DNA-binding pseudobarrel domain 185 283 IPR015300 -
Viun6g01616 288 PANTHER B3 DOMAIN-CONTAINING 7 272 - -
Viun6g01616 288 SMART B3_2 190 286 IPR003340 GO:0003677
Viun6g01616 288 SMART B3_2 8 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01616 Viun-Chr6 24038026 24052960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01616 6 284 B3 DNA Binding Superfamily AT5G66980 28.754 6.48e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun6g01616 B3 8.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01616 - - var:108345771 446.047