Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01613 ATGGAGCAGTATGAAGTGCTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAACGCTCTCGTAGGTCTGCTCACCTGGAGATGGAGCTCCTCTCCAAATTAAGGAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATTGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGTGTTATGTTCCCTGAGGAGAAACTATGTAAATGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCATGCGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCGTGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTCGTCGGAACTCCAAGCTATATGTGTCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGGCCCTGATTAACAAAATTAATAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAACTACTCGGGAACCAACATCTTCAACCTTATGTTCGTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACTTTGCCAGGTATTTGGTCAGAATCCAACTACATGAAGAAAGCTAGATTTTTGAAGTCAGAAGATGATCATGTTTCTGTCTCTGGGTATAAGTGGCATTCTATTAGTAATGATAGGACTTTAAATCCCAGTGTATCAGGAGCGGAGGTAGATTCTCTATGCTCTACGCTAGAGATAGACTGTACTCCTGATAATTTAAATCAAAGATTTGCTAAACTTTCTATTGGAGACAATCACGATTTGAAGTCACAGCATAAGTCAGCTGTTTCGAGAACTTCTAGTAATGCCAGGATTCCTACGCTAACTACATCAAAAGCTTCTGCCACCCCGAAGAAATCAATGGTATCCTCAAAGAATCATAAGACGCTTCCCGTTTCACACAATATGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTCCCACAAAGTTGTGCCATTCAGCTGCCTCCCCGCAGGTCCAGTACTGGTTTACTTTGCAATGTAACCTCACCCAATATTTCAGTTAACTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATGTTCCCCAAACTCGGTACAGGGTTCCTCAGGTTCTCCTCCTTGTGGCAATGATTCAACATTGATAGACAAGTGCACAATCAAGGTATGTGACACATCCTATGTTAAGCCAGGATGTACGGATGCTTGGCAGGGAATCAAGCGCAGCATGCTCAAGAAAAACAATGAGGATAAAAGTGGGTCATCTGATCAAAATGCAACAGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACTTCATCATTCCAACAAAGGGCGGAGGCATTAGAAGGTCTGCTTGAATTTAGTGCCAGATTACTGCAGCAGGAAAGGTATGGAGAACTCGGGGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAGGAGAACACTTTCAGCCGAGAACAATCCACTTAA 1866 0.4244 MEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVRKVHLKINSPRRSTLPGIWSESNYMKKARFLKSEDDHVSVSGYKWHSISNDRTLNPSVSGAEVDSLCSTLEIDCTPDNLNQRFAKLSIGDNHDLKSQHKSAVSRTSSNARIPTLTTSKASATPKKSMVSSKNHKTLPVSHNMKQPVHTTRRASLPFPQSCAIQLPPRRSSTGLLCNVTSPNISVNSPRIDRIAEFPLASYEDQLFPINRCSPNSVQGSSGSPPCGNDSTLIDKCTIKVCDTSYVKPGCTDAWQGIKRSMLKKNNEDKSGSSDQNATAGASSHNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQST 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01613 621 MobiDBLite consensus disorder prediction 531 549 - -
Viun6g01613 621 ProSiteProfiles Protein kinase domain profile. 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01613 621 Pfam Protein kinase domain 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01613 621 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 571 - -
Viun6g01613 621 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Viun6g01613 621 MobiDBLite consensus disorder prediction 363 400 - -
Viun6g01613 621 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Viun6g01613 621 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Viun6g01613 621 CDD STKc_Nek 3 258 - -
Viun6g01613 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Viun6g01613 621 Gene3D Transferase(Phosphotransferase) domain 1 84 274 - -
Viun6g01613 621 SMART serkin_6 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01613 621 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Viun6g01613 621 MobiDBLite consensus disorder prediction 524 549 - -
Viun6g01613 621 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01613 Viun-Chr6 24026617 24033013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01613 10 295 MAP Kinase Kinase Kinase AT1G53570 29.967 7.57e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Viun6g01613 Pkinase 7e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01613 K08857 - gmx:100796019 1125.15