LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g01612	ATGGAGCAGTATGAAGTGCTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAACGCTCTCGTAGGTCTGCTCACCTGGAGATGGAGCTCCTCTCCAAATTAAGGAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATTGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGTGTTATGTTCCCTGAGGAGAAACTATGTAAATGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCATGCGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCGTGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTCGTCGGAACTCCAAGCTATATGTGTCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGGCCCTGATTAACAAAATTAATAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAACTACTCGGGAACCAACATCTTCAACCTTATGTTCGTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACTTTGCCAGGTATTTGGTCAGAATCCAACTACATGAAGAAAGCTAGATTTTTGAAGTCAGAAGATGATCATGTTTCTGTCTCTGGGTATAAGTGGCATTCTATTAGTAATGATAGGACTTTAAATCCCAGTGTATCAGGAGCGGAGGTAGATTCTCTATGCTCTACGCTAGAGATAGACTGTACTCCTGATAATTTAAATCAAAGATTTGCTAAACTTTCTATTGGAGACAATCACGATTTGAAGTCACAGCATAAGTCAGCTGTTTCGAGAACTTCTAGTAATGCCAGGATTCCTACGCTAACTACATCAAAAGCTTCTGCCACCCCGAAGAAATCAATGGTATCCTCAAAGAATCATAAGACGCTTCCCGTTTCACACAATATGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTCCCACAAAGTTGTGCCATTCAGCTGCCTCCCCGCAGGTCCAGTACTGGTTTACTTTGCAATGTAACCTCACCCAATATTTCAGTTAACTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATGTTCCCCAAACTCGGTACAGGGTTCCTCAGGTTCTCCTCCTTGTGGCAATGATTCAACATTGATAGACAAGTGCACAATCAAGGTATGTGACACATCCTATGTTAAGCCAGGATGTACGGATGCTTGGCAGGGAATCAAGCGCAGCATGCTCAAGAAAAACAATGAGGATAAAAGTGGGTCATCTGATCAAAATGCAACAGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACTTCATCATTCCAACAAAGGGCGGAGGCATTAGAAGGTCTGCTTGAATTTAGTGCCAGATTACTGCAGCAGGAAAGGTATGGAGAACTCGGGGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAGGAGAACACTTTCAGCCGAGAACAATCCACTTAA	1866	0.4244	MEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVRKVHLKINSPRRSTLPGIWSESNYMKKARFLKSEDDHVSVSGYKWHSISNDRTLNPSVSGAEVDSLCSTLEIDCTPDNLNQRFAKLSIGDNHDLKSQHKSAVSRTSSNARIPTLTTSKASATPKKSMVSSKNHKTLPVSHNMKQPVHTTRRASLPFPQSCAIQLPPRRSSTGLLCNVTSPNISVNSPRIDRIAEFPLASYEDQLFPINRCSPNSVQGSSGSPPCGNDSTLIDKCTIKVCDTSYVKPGCTDAWQGIKRSMLKKNNEDKSGSSDQNATAGASSHNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQST	621

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun6g01612	621	MobiDBLite	consensus disorder prediction	531	549	-	-
Viun6g01612	621	ProSiteProfiles	Protein kinase domain profile.	4	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Viun6g01612	621	Pfam	Protein kinase domain	4	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Viun6g01612	621	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	1	571	-	-
Viun6g01612	621	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
Viun6g01612	621	MobiDBLite	consensus disorder prediction	363	400	-	-
Viun6g01612	621	FunFam	Serine/threonine-protein kinase Nek3	86	332	-	-
Viun6g01612	621	FunFam	Serine/threonine-protein kinase Nek2	1	83	-	-
Viun6g01612	621	CDD	STKc_Nek	3	258	-	-
Viun6g01612	621	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g01612	Viun-Chr6	24026617	24033013	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g01612	10	295	MAP Kinase Kinase Kinase	AT1G53570	29.967	7.57e-36	139

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Viun6g01612		Pkinase	7e-62	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g01612	K08857		-	gmx:100796019	1125.15

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun6g01612	6	24026617	24033013	Viun6g01612	6	24026617	24033013	ECH
	Viun6g01612	6	24026617	24033013	Viun7g02212	7	26567262	26574293	PCT

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