Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01610 ATGTTCGATGGAGTATCAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTTCACTTGTCTTTCCCTCTTCATGCCTCTTCAACTTCCCCAACTACTTTTCTACCCTTTGATCCCTATAACCCTTCTCAATCTCAATTCCAAACCAATCTCTTCCACCCCTCATTGCACCCTCCTTCTTCCCCCACCCACAAACACAAGCTTCCTTCAATCCACCAAACACAATTACCAGACCTAACCGATTCCTGGACCAACGATGAACTGCTTGCACTTTTCCGAATCAGATCTACCATGGAGAATTGGTTCCCGGAGCACACATGGGACCATGTCTCAAGGAAGCTGGCAGAGCTTGGGTTTAAGAAGAGTGCCGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTGGATATTTCGACAACATTAGCAACTTCGGCAAGAGCAATTACCGGTTCCTTAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATTCGGGTGGTGGTGACGGTGATGATGCAACTGTGAGGAGTGAAAAGACCCTCCTCCACCTTGGAGGAGACAACATGGGCCATGGACATGGACAATGTGATGGAACAGAAGACAAGGTTGTTGTGGCTGAAAAGTCAAAGGAGCGGAAGAGGAAGAGGCGTGACAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTGTGGTGAACAAGATGATGGCTCAACAGGAAGAGATTCACAACAGGCTCCTCGAGGACATGGTGAAGAGGGACCAAGAGAAGTTAGCCAGAGAGGAAGCATGGAAGAAGCAAGAGATGGAGAGGATGAACAAGGAGCTTGACATCATGGCACAGGAACAAGCTATTGCCGGAGACAGACATGCCATTATAATCGAATTCTTAAAGAAATGTGCAAAAACAGCAGCAACAACATCAGCAACTTCACCATCTCCTTCCAGTCTTCCAAATCGTTCACTATTGCACTCACTAAACCCTAATAGTCCTTCCAATGAAGACAACAATCTTGATCCAACACCACCTTCTCCTGAAACGCTTCTGAACCATGATCAAACTAAGTTAAGACCAGAAAACCCTAATTCGAGTGAGACATTATTATTACAAGTTCCTTCTTCCTCCAATTCTTCTCCAAATCCCCACAACCCTAGTTCTTCCCTCAACAGCCATAACAATAATATTATCCCGTTATTAGAATCAAACTCAGTTTCCACATACAAAACAACCTCAACAACCCCACAAGCCAGCACTGAGAACTCCAAGGATGATGTTGGGAGAAGATGGCCGAGAGATGAAGTGCTGGCACTGATAAACCTGAGATGCACGAGTGTAAGCAACAACAACAGTGAAGAAAAAGAAGGAAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGCTGGGATACAAAAGAAGCGCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACTAAGGATGTTAACAAGAAAAGGTCCCTTAATTCTAGGACCTGTCCCTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAAATTGTGGCAGCACAATCGGAAAGAGAAGGAAACTACATGAATCCAACCGCGAATTCCGGCCAAGTGCCACCGGATTTTGGTGTCGATGATGAAGATGAGTCTTCTCATGTGGGGTCTGGTGGTTTGGATCATTATGCATGTTAA 1710 0.455 MFDGVSDQFHQFIAPRTTLPLHLSFPLHASSTSPTTFLPFDPYNPSQSQFQTNLFHPSLHPPSSPTHKHKLPSIHQTQLPDLTDSWTNDELLALFRIRSTMENWFPEHTWDHVSRKLAELGFKKSAEKCKEKFEDESGYFDNISNFGKSNYRFLSELEELCQNPDSGGGDGDDATVRSEKTLLHLGGDNMGHGHGQCDGTEDKVVVAEKSKERKRKRRDRFEMFKGFCESVVNKMMAQQEEIHNRLLEDMVKRDQEKLAREEAWKKQEMERMNKELDIMAQEQAIAGDRHAIIIEFLKKCAKTAATTSATSPSPSSLPNRSLLHSLNPNSPSNEDNNLDPTPPSPETLLNHDQTKLRPENPNSSETLLLQVPSSSNSSPNPHNPSSSLNSHNNNIIPLLESNSVSTYKTTSTTPQASTENSKDDVGRRWPRDEVLALINLRCTSVSNNNSEEKEGNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVAAQSEREGNYMNPTANSGQVPPDFGVDDEDESSHVGSGGLDHYAC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01610 569 Gene3D - 86 141 - -
Viun6g01610 569 Gene3D - 429 493 - -
Viun6g01610 569 CDD GT1 427 495 - -
Viun6g01610 569 MobiDBLite consensus disorder prediction 307 428 - -
Viun6g01610 569 ProSiteProfiles Myb-like domain profile. 85 137 IPR001005 -
Viun6g01610 569 FunFam Trihelix transcription factor GT-2 86 142 - -
Viun6g01610 569 PANTHER FI21293P1 77 541 - -
Viun6g01610 569 ProSiteProfiles Myb-like domain profile. 428 488 IPR001005 -
Viun6g01610 569 MobiDBLite consensus disorder prediction 533 569 - -
Viun6g01610 569 MobiDBLite consensus disorder prediction 51 74 - -
Viun6g01610 569 MobiDBLite consensus disorder prediction 307 420 - -
Viun6g01610 569 FunFam Trihelix transcription factor GTL2 429 493 - -
Viun6g01610 569 Pfam Myb/SANT-like DNA-binding domain 84 145 IPR044822 -
Viun6g01610 569 Pfam Myb/SANT-like DNA-binding domain 427 514 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01610 Viun-Chr6 24012868 24015428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01610 221 520 Trihelix Transcription Factor Family AT5G28300 47.231 4.12e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun6g01610 Myb_DNA-bind_4 8.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01610 - - vra:106774627 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01610 6 24012868 24015428 Viun6g01610 6 24012868 24015428 ECH
Viun6g01610 6 24012868 24015428 Viun7g02210 7 26548139 26550861 PCT