Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01601 ATGGCATCTCAGCAACACGATGCCGTTTTCCGCGAGGAAGACATGGACGACGAAGACGACGAGTCCCAGGAGGACGAAGAGTTCGAAGAAGACGACGACGTTTTGCCCGCCGACGATGAAGAAAACGAGCCTTCTCCCTCCGCCGCTCTCGCCGTCACCGTCGCCGTCCCCGGCTCCGCCATCTCAAACGGCGGAGCCGCTCCACTATCGACGCCCACCGCCACTACCATCGTCATCGGTGACTCCTCCGATCCGAAGCGGCGGCGCGTGGAGCCAATCGAGGAAAAGAAGCCACCGCCGCCGCTAGACGACTCGCGGCGGCTGTTCCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCCTTCAAGGGTTCCTGGACTACACCTCTCAGAGAGGATCCTCTCACCACAACGACACCGCTCTGTTTTACGACCAAATCAAGTCGAAACTCCAACTCGATTTCAACAAGAACCAGCTGGTGGAGAAGATCCGAAGGCTTAAGAAGAAGTACCGAAACGTCCTCAACAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCACACGATCAAGCAACCTTCGAAATCTCTCGCAAGATCTGGAGCAGCGTGGCTCCAATCGGCGAAAATTCCTTGGACGACGACGAAATCAACCTTTGCCCCAACCCTAACCCTATCCCCCACCCTAACCTTAATTTTAGCCCCGTAATTCTCAAGAACGAAACGACTTCCAGGAATTCCGCAGAGAAGAAAACACCGAAACGCTCCCGGCCTCGATCGGCGGTGAAAATCGAGCCAAACGATGGATCGGCGTCGAACAGAGATCTTAATTGTACTAGCAATGCTACAACTATGGTTACTCCTACTGCTACTGCTACTAACACTACCGCTACTACTACTACTAATAACAATCATAACAGTGGTTATAGCAATAACATACCGAGTTTGATTGAGGAGACGGTGAGGAGTTGTCTGTCGCCGGTGGTGAGGGAGTTGGTGGGAGCGATAGGAGGAGGAGGAGGAGCGTTCGGTGGGAGAGGAGTTTCCTTCAATTTAAACCCTATGCCTCTGATGAATTTGAGTTATGGTGGTGGAGAATTGGTGGATGAGAAATGGAGGAAGCAACAGATATTGGAGTTGGAAGTGTACTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAAGCTGCGATGGAGGAGTTGCGGTCCGGTGGTGGAGGAGGAGGAGGAGGAGTTTGA 1242 0.5354 MASQQHDAVFREEDMDDEDDESQEDEEFEEDDDVLPADDEENEPSPSAALAVTVAVPGSAISNGGAAPLSTPTATTIVIGDSSDPKRRRVEPIEEKKPPPPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSSVAPIGENSLDDDEINLCPNPNPIPHPNLNFSPVILKNETTSRNSAEKKTPKRSRPRSAVKIEPNDGSASNRDLNCTSNATTMVTPTATATNTTATTTTNNNHNSGYSNNIPSLIEETVRSCLSPVVRELVGAIGGGGGAFGGRGVSFNLNPMPLMNLSYGGGELVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSGGGGGGGGV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01601 413 MobiDBLite consensus disorder prediction 12 40 - -
Viun6g01601 413 MobiDBLite consensus disorder prediction 245 263 - -
Viun6g01601 413 MobiDBLite consensus disorder prediction 82 105 - -
Viun6g01601 413 Pfam Protein of unknown function, DUF573 109 203 IPR007592 GO:0006355
Viun6g01601 413 Coils Coil 381 401 - -
Viun6g01601 413 PANTHER BNAANNG10740D PROTEIN-RELATED 4 401 IPR007592 GO:0006355
Viun6g01601 413 MobiDBLite consensus disorder prediction 64 80 - -
Viun6g01601 413 MobiDBLite consensus disorder prediction 243 280 - -
Viun6g01601 413 Coils Coil 157 177 - -
Viun6g01601 413 MobiDBLite consensus disorder prediction 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01601 Viun-Chr6 23928309 23930150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01601 1 409 GeBP Transcription Factor Family AT5G28040 43.011 4.61e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Viun6g01601 DUF573 1.7e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01601 - - gmx:100779712 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01601 6 23928309 23930150 Viun7g02194 7 26441088 26442248 PCT