Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01588 ATGGCCTCATCATCATCTTCTTCCTCTTCTCTAAACTTTACAGTGCGAAGGTGCGAACCAGAGCTGGTGCCTCCTGCTATCCCCACTCCTCATGAAGTTAAACTACTTTCCGACATTGATGATCAAGATGGTCTGCGTTTCCACATTCCGTTGATACAAATTTACCGAAAGCACGCATCGACGGCAGAGAAAGACCCAGTTCAAGTGATTCGACAAGCACTGTCGCAAACACTTGTCTTCTATTACCCATTTGCGGGTAGGCTCAGAGAGGGGCCTCACCGCAAATTGATGGTGGATTGCAACGGAGAAGGTGTCATGTTCATTGAAGCTGATGCTGACGTCACACTCGATGAGTTCGGTGATTCTCTCCACCCTCCATTCCCATGCTTCCATGAACTGTTATACCATGTTCCTGTCTCACAGCAAGTTACCAACATCCCCCTTCTACTCGTACAGGTGACACGCCTTAGGTGCGGTGGTTTCATCTTGGCCTTCTCCTTCAACCACACCATGTGTGACGGAACTGGTTTTTCACAATTCGTGAACACCTGGGCTGAAATAGCTCGCGGTGCAACCAAACCTTCCAATCCCCCGGTTTGGCGTAGGGAGCTTCTCATGGCAAGAGACCCACCTCGCATCACATGCAACCATCGCGAATACGAACATGTTCCAGACACAGTCAAAGGAACCGTCGCATCAAACGACCATGACATGGTTCTTCGATCGTTCTTCTTCGGACCTTCCCAAATAGCCGCTCTTCGTGGCTTGATTCCACCCCACCTTCATCACTGTTCCACTTTTGATCTCATCACAGCATGCTTCTGGCGCTGTCGTACAAAAGCGTTGCAGATAGAGGCAGAAGAGGATGTTCGCATGATGGTGATAGTGAACGCACGTGCAAAGTTCAATCCTCCTTTACCCGTTGGTTACTACGGCAATGCTTTTGCGTACCCTGCAGCAGTTACCACCGCAGGGAAGCTTCGTGAGAATCCGTTTGGGTATGCAGTGAATTTGATAAATAAAGTGAAGGGTGAGGTGACAGAAGAGTACATGCATTCTGTGGCGGATCTCATGGTGTCTAAGGGACGCTGCTTATTCACAACGACGAGATCGTTTATTGTGTCCGATTTGAGACGTTTTAGTTTGAGAGAAATTGATTTTGGGTGGGGTAATGCATTGTATGGTGGAGTAGCCAAAGCTGGGGCTGGAGCATTTCCTGCAGTAATATTTCTGATGTCGCATGAGAATGCAAATGGAGAAGAAGGTGCATTGATACCAATTTGGTTGCCTGCCAAAGCCATGGAAAAGTTTGAACACGAGTTATATGACATGCTTCGAAAATAA 1344 0.4784 MASSSSSSSSLNFTVRRCEPELVPPAIPTPHEVKLLSDIDDQDGLRFHIPLIQIYRKHASTAEKDPVQVIRQALSQTLVFYYPFAGRLREGPHRKLMVDCNGEGVMFIEADADVTLDEFGDSLHPPFPCFHELLYHVPVSQQVTNIPLLLVQVTRLRCGGFILAFSFNHTMCDGTGFSQFVNTWAEIARGATKPSNPPVWRRELLMARDPPRITCNHREYEHVPDTVKGTVASNDHDMVLRSFFFGPSQIAALRGLIPPHLHHCSTFDLITACFWRCRTKALQIEAEEDVRMMVIVNARAKFNPPLPVGYYGNAFAYPAAVTTAGKLRENPFGYAVNLINKVKGEVTEEYMHSVADLMVSKGRCLFTTTRSFIVSDLRRFSLREIDFGWGNALYGGVAKAGAGAFPAVIFLMSHENANGEEGALIPIWLPAKAMEKFEHELYDMLRK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01588 447 Gene3D - 222 441 IPR023213 -
Viun6g01588 447 FunFam Spermidine hydroxycinnamoyl transferase 13 220 - -
Viun6g01588 447 Gene3D - 9 221 IPR023213 -
Viun6g01588 447 Pfam Transferase family 18 444 - -
Viun6g01588 447 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 21 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01588 Viun-Chr6 23820240 23822407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01588 46 444 Monolignol Biosynthesis Gene Families AT5G48930 28.954 3.38e-53 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01588 K19861 - gmx:100787907 670.618