Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01585 ATGGGGTCAATGGCTTTGGTTCAAGGATTGAGCATCAAATGCGCTCGTGTTGGCGATGTGGAGATTCCGAACAACAAGCGAATCGAGTATTCGCTGCAGTACATTCATGGAGTTGGGAGGAGCAGAGCGCGACAGATCTTGTGTGATATAAGCATGGATAACAAATTGACAAAGGAGCTCACTCAGGAGGAAATCATCACTCTCAAGGACGAAGTCTCCAGGTACATGATTGAAGGAGACTTGAGACGATTTAATGCGATTGATATAAAGAGACTGAAGGACAGTCAGTGCTACAGAGGAATAAGGCATATTCAGGGGCTTCCTTGCAGAGGCCAGCGAACCAAGAACAATTGTAGGACCTTGAAGGGTAAGAAGGTTGCCATTGCCGGTGTTGGAAAACTGGGTATATGGCACCGGTTTTGA 423 0.4657 MGSMALVQGLSIKCARVGDVEIPNNKRIEYSLQYIHGVGRSRARQILCDISMDNKLTKELTQEEIITLKDEVSRYMIEGDLRRFNAIDIKRLKDSQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGVGKLGIWHRF 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01585 140 Hamap 30S ribosomal protein S13 [rpsM]. 14 130 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Viun6g01585 140 Gene3D 30s ribosomal protein s13, domain 2 84 134 IPR027437 -
Viun6g01585 140 ProSitePatterns Ribosomal protein S13 signature. 99 112 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Viun6g01585 140 ProSiteProfiles Ribosomal protein S13 family profile. 17 123 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Viun6g01585 140 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 6 134 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Viun6g01585 140 FunFam 30S ribosomal protein S13 4 83 - -
Viun6g01585 140 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 10 130 - -
Viun6g01585 140 Pfam Ribosomal protein S13/S18 16 120 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Viun6g01585 140 SUPERFAMILY S13-like H2TH domain 15 126 IPR010979 GO:0003676
Viun6g01585 140 Gene3D - 15 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01585 Viun-Chr6 23780573 23781467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01585 16 129 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.822 7.85e-07 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01585 K02952 - gmx:100499902 225.328