LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g01577	ATGGGGTGTGTGATTAGCAGGGATGTGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGGTCAGAGTAAGAGGAAGGTTGATGGAGTGTCAGGGAGCAAGAGTGAGATTGTGGTAGAGATTCAGAATGGTGAGGAGAAAGAGAAGGGTGGTGGTGAAGAGGTGCAGCGGCCTCGGGGCGAAAGGAGGAGATCGAAGGCGAATCCGAGGCTGAGCAATCTGCCCAAACATTTGCGGGGGGAGCAGGTTGCTGCTGGATGGCCGCCGTGGCTCACCGCAGTGTGTGGGGAAGCACTCAGTGGCTGGATTCCAAGAAAGGCAGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGGACTTATAGTAATGTGTACAAAGCTAAAGACACAATGACGGGTAAAATTGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTAGAACCTGAGAGTGTAAAATTCATGGCGAGAGAGATTCTTATTTTGCGAAGGTTGGACCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTATATGGATCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAGCCGTCATGTACTTCACCGTGATATTAAAGGTTCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATTGCCGACTTTGGACTGGCTTCTATATTTGATCCAAACCATAAACATCCTATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAGTTGCTCCTTGGTGCCACAGATTATAGTGTGGGTGTAGATCTCTGGAGTGCTGGATGTATATTAGGAGAGTTATTGGCTGGGAAACCAATCATGCCTGGTCGTACAGAGGTGGAACAACTGCACAAGATATACAAACTATGTGGTTCACCTTCCGATGAGTACTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCACGAGAGCCATACAAGAGGCGCATAAGAGAGACTTTTAAAGATTTTCCATCTTCTGCTCTACCCCTCATTGATACACTTCTCGCAATTGATCCTGTAGAACGGGAAACTGCCTCAGATGCTTTGAGAAGTGAGTTCTTTACGACACAACCTTATGCTTGCGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGAAGGGATGACGAAATGAGGAGACTAAGAGCTGCTGGCAAAGCTCAGGTTGATGGCCCCAAGAAGCATCGTACTCGTGATCGTGGTACAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCGAATATTGATAGAAGAAGGCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGTTTTCCTTTGGGTTCTTCCCATCATATTGATCCTGATACTGTTCCAACTGATGTCTCTTTCACATCAACCTCTTATACCTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGTAATGCTGCTGACATTGGAGTGCCAAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCACAGAAAGATTCTCTCAAGGACAAGATTAAAGGAAAGAAAATCATAGCTTAG	1731	0.45	MGCVISRDVSKGIISEVKEEKGLSGQSKRKVDGVSGSKSEIVVEIQNGEEKEKGGGEEVQRPRGERRRSKANPRLSNLPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMDHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHSRHVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRRIRETFKDFPSSALPLIDTLLAIDPVERETASDALRSEFFTTQPYACDPSSLPKYPPSKEMDAKRRDDEMRRLRAAGKAQVDGPKKHRTRDRGTKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVPKRKKHTAGDALDLSKPQKDSLKDKIKGKKIIA	576

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g01577	576	MobiDBLite	consensus disorder prediction	16	81	-	-
	Viun6g01577	576	FunFam	probable serine/threonine-protein kinase At1g54610	101	196	-	-
	Viun6g01577	576	MobiDBLite	consensus disorder prediction	44	72	-	-
	Viun6g01577	576	SMART	serkin_6	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g01577	576	MobiDBLite	consensus disorder prediction	542	576	-	-
	Viun6g01577	576	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	234	246	IPR008271	GO:0004672\|GO:0006468
	Viun6g01577	576	Pfam	Protein kinase domain	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g01577	576	ProSitePatterns	Protein kinases ATP-binding region signature.	120	143	IPR017441	GO:0005524
	Viun6g01577	576	FunFam	probable serine/threonine-protein kinase At1g54610	197	438	-	-
	Viun6g01577	576	MobiDBLite	consensus disorder prediction	527	576	-	-
	Viun6g01577	576	Gene3D	Phosphorylase Kinase; domain 1	101	196	-	-
	Viun6g01577	576	SUPERFAMILY	Protein kinase-like (PK-like)	109	405	IPR011009	-
	Viun6g01577	576	Gene3D	Transferase(Phosphotransferase) domain 1	197	438	-	-
	Viun6g01577	576	PANTHER	CELL DIVISION PROTEIN KINASE	112	402	-	-
	Viun6g01577	576	CDD	STKc_CDK9_like	114	398	-	-
	Viun6g01577	576	MobiDBLite	consensus disorder prediction	405	453	-	-
	Viun6g01577	576	ProSiteProfiles	Protein kinase domain profile.	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g01577	576	MobiDBLite	consensus disorder prediction	416	453	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g01577	Viun-Chr6	23726837	23731258	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g01577	106	438	Core Cell Cycle Gene Families	AT5G10270	53.009	9.28e-125	375

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Viun6g01577		Pkinase	1.3e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g01577	K08819		-	gmx:100786837	1082.01