Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01551 ATGGTACCAATTGGTCATGCTTCTGATGACAAGCAAAAAAAACGAGACTCTGGAGAAATTCTTTCGGAGGAAGAGAAAAGTGTGGTAACTCTAAGAGAGCTCTTTGAAGAATGCATTAGTGACACTGACAAATCTCATCAACCACCTGAATTGGCTGGTGGTAATCCAAGTCCAACGACTGAGTTTCATCGGAGGAGGAAGAAGTTACTTAAACCGTGCAAAATAAGATCAATTGAGCACCTACCATCTTTTTCTCCAAGTTGTTTGTCAAAAAGAACAAAGCCTAAAAGCAAAAGCATTGGCAAAAACATTATTCAATGCAATCCACACAGTTCTAGAACTTTGGTGAATTTCAGTCTTTCTGATCTGAGACATGCAACCAACAATTTTAGCAATGAGAATATAATTGGAAGAGGTGGTTATGCTTATGTTTATAAGGGTAGCCTGCAAGATGGGCAACTAATAGCAGTTAAGCAACTGAGAAGAGGGACTGCTGAAGACAGAATATCAGTTCTTCTATCTGAGTTAGGAATTCTTGCTCATGTTGACCACCCCAATAATGCAATGCTTATTGGATTTGGAGTAGAAGGGGGAATGTACCTTGTGTTCCAATTATCTCCTTTGGGAAATTTAGGATCTCTTCTTCATGGTCCTAATAAAAATACCTTAGATTGGGGCAAAAGGTATAAAATTATTTTGGGGATAGCAGATGGCCTTCTCTATCTTCATGAGATTTGTCAAAGGCGAATCATTCATAGAGATCTTAAATCAGAAAATATTTTGCTCACGGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTCTCAAAATGGCTACCAGAACCATGTACTCATCATATTGTACCAAAATTTGAAGGCACAGTGGGGTATTTTGCTCCTGAGTATGTGATGCATGGCATAGTAAACGAAAAAACTGATATTTATTCCTTTGGAGTCTTACTTCTGGAGATTATAACTGGGCGTCATGCTTTGGATCATTTAAACGACAGTATTGTGTTATGGGCAAAGCCTTTATTGGTAGCTAACAATATTAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGACTGGGAACAAATGGAACGTGTAGTTTTGACTGCATCTCTGTGTGTTGAGCAATTTCCTATCTTACGCCCCAGCATGAGTCAGATTGCAATACTGCTAAGAGGTGATGACTATGTCATGGAACATACTGAGAGGAGTAACAAGATGCACAAGAATACAACTCAAGGAGCTATCTAA 1266 0.3886 MVPIGHASDDKQKKRDSGEILSEEEKSVVTLRELFEECISDTDKSHQPPELAGGNPSPTTEFHRRRKKLLKPCKIRSIEHLPSFSPSCLSKRTKPKSKSIGKNIIQCNPHSSRTLVNFSLSDLRHATNNFSNENIIGRGGYAYVYKGSLQDGQLIAVKQLRRGTAEDRISVLLSELGILAHVDHPNNAMLIGFGVEGGMYLVFQLSPLGNLGSLLHGPNKNTLDWGKRYKIILGIADGLLYLHEICQRRIIHRDLKSENILLTENFEPQICDFGLSKWLPEPCTHHIVPKFEGTVGYFAPEYVMHGIVNEKTDIYSFGVLLLEIITGRHALDHLNDSIVLWAKPLLVANNIKDLVDPSLGDDYDWEQMERVVLTASLCVEQFPILRPSMSQIAILLRGDDYVMEHTERSNKMHKNTTQGAI 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01551 421 SMART serkin_6 130 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01551 421 Gene3D Transferase(Phosphotransferase) domain 1 207 418 - -
Viun6g01551 421 Gene3D Phosphorylase Kinase; domain 1 90 204 - -
Viun6g01551 421 PANTHER OS08G0249100 PROTEIN 15 411 IPR046958 -
Viun6g01551 421 MobiDBLite consensus disorder prediction 7 25 - -
Viun6g01551 421 MobiDBLite consensus disorder prediction 39 65 - -
Viun6g01551 421 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 207 410 - -
Viun6g01551 421 SUPERFAMILY Protein kinase-like (PK-like) 111 395 IPR011009 -
Viun6g01551 421 Pfam Protein kinase domain 131 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01551 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Viun6g01551 421 ProSiteProfiles Protein kinase domain profile. 130 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01551 421 MobiDBLite consensus disorder prediction 1 25 - -
Viun6g01551 421 ProSitePatterns Protein kinases ATP-binding region signature. 136 158 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01551 Viun-Chr6 23553681 23560684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01551 115 418 Receptor kinase-like Gene Family AT1G53420 39.871 1.07e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun6g01551 PK_Tyr_Ser-Thr 6.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01551 - - gmx:113001177 600.127