Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01528 ATGTGTTTATCTGAGGGAGAGAGAGGCATGGCTCTAGAAGCAGTAGTGTATCCCCAACCTCAGGACCCGTTTGGCTCTGCAATCAAAGACCTCTACAGCTACAACAACTTGTTAGAAGCTGCTGCTGCAGCAAACTGGGGTTATGCAGATTTCACCCTTCAAAAAGAAGACCAAGCTTCTGTCACTTTTTGTGACAACCAAACAGAGAATTACTCCTATGGAGAATGGAACTCTTCTCCTCCATCTCTGTTGCCTCACACCATGGATGCATCAAACCCTCCTTCTTCAGAAACCAGCAACGCGCAGAACAACTTAGATTCTTCAGTTTCCACCCCAGCTCGTACCAAAAGACGCAGAACCAAAAGCAGGAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACCCACATTGCTGTAGAACGCAACAGAAGGAAGCAGATGAACGAGTACCTCTCTGTTCTTCGCGCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCGTCGATTATTGGGGGTGCTATAAACTTTGTGAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAGGGGAAAGCTGAAGTACCCTTTTCGGAGTTTTTCTCATTTCCTCAGTACTCAACAAGTGCCAGTGGTGGCTGTGATAACTCTGCAGCAGCCATGAGTGAGCAAAAGGGAGAGGTTCAGTCTGCCATTGCTGACATAGAAGTCACAATGGTAGAGACCCATGCAAATCTCAAAATAAGATCCAAGAAACGACCAAAGCAGCTTCTGAAAATAGTATCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTTAACGTTACCACAACCGAGGAAATTGTCCTCTATTCTCTCAATGTCAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAGATGCTGAACAGGATTCAACAGGAGTGA 972 0.4588 MCLSEGERGMALEAVVYPQPQDPFGSAIKDLYSYNNLLEAAAAANWGYADFTLQKEDQASVTFCDNQTENYSYGEWNSSPPSLLPHTMDASNPPSSETSNAQNNLDSSVSTPARTKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRALMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKAEVPFSEFFSFPQYSTSASGGCDNSAAAMSEQKGEVQSAIADIEVTMVETHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTEEIVLYSLNVKVEEDCKLGSVDEIAAAVYQMLNRIQQE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01528 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 195 IPR036638 GO:0046983
Viun6g01528 323 MobiDBLite consensus disorder prediction 74 129 - -
Viun6g01528 323 Gene3D - 121 196 IPR036638 GO:0046983
Viun6g01528 323 PANTHER MAX DIMERIZATION, MAD 37 322 - -
Viun6g01528 323 CDD bHLH_AtFAMA_like 134 205 - -
Viun6g01528 323 Pfam Helix-loop-helix DNA-binding domain 132 183 IPR011598 GO:0046983
Viun6g01528 323 MobiDBLite consensus disorder prediction 74 111 - -
Viun6g01528 323 Coils Coil 179 199 - -
Viun6g01528 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 182 IPR011598 GO:0046983
Viun6g01528 323 SMART finulus 137 188 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01528 Viun-Chr6 23376694 23378572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01528 10 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.273 2.63e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun6g01528 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01528 - - gmx:100777413 509.22