Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01527 ATGAAGAAACACCATCATCACGCAACCCTACTCCTCCTCCTCCTGGTGGTGGTGGCGGTGCCGTCAATTCCAATCGCCGTCGCGCAGTCCCAGCCCTCGCCCAATGAATTCACCGATCCAAACCTAAACAACTTCAACCCCTCTCTGGCCGCAATAATCGTCATATTAGTGGCGGCGCTTTTCGTCATGGCCGTTTTCTCCGTCTACGTACGCCACTGCGCCGATACGCCTCCCAACAGCGTTAGGCCTCTCACGTCCGCACGCTCCAGAAGAGTCGCGCGTGGCCTTGACCCCGCCGTCATTCAGACCTTCCCCATTCTCGAATACTCCGAGGTCAAGATCCACAAGATCGGAAAAGAACCCTTGGAATGCGCGGTGTGTTTATGCGAGTTTGAAGACGCCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTTTTCCACCCCGAGTGCATAGACGAGTGGTTGAGCTCCCACACCACGTGTCCCGTGTGCCGCGCAAATCTCGTTCCGGCGGAATCTCAGGATTCCGACGCCAACAACGCTGCTGCTGCAGTTCCCGATCCGCAAATGTTAACGCCGGACCTTGAAGCGCAAAACGACGCCGTGGAAACCGCGCCAGAGCAGCAGAACTCGGACTCTGACCGTTTCTTGACCGAACCGGAAGTTCTTTCTGTGGAGAAAACGCTGAAACGGAACCGCACGCGTGGATCGCGGTCGAACCGGCCTCGCCGGTTCTCGAAGTCGCACTCGACTGGGCACTCGATCGTCCAACCGGGCGAAAATATGGACCGGTTCACTCTGAGACTTCCTCTGGAGGTTCGCAAGCAACTAATAAACCGGGAATTGCATCGTGCAAGTAGCTTGATCGTGTTACCGAGGGAAGGTAGTTCGAGGCGGGGTTACCGAACCGGAGGAGAAGGGAGTAGTCGGGGGAAACATTCGAGGCGGTTGGACCGGAGTGTGAAATCGGACCGATGGATTTTCTCTGTAGCTGCGCCGTTTTTCGCTAGGGCGCTGTCTATTAGGTCCCCCAGGGTGCGGAACAACGATGTTGAAAGAACGTCGACGTCATCCACGGCGCCGATTATGTCGCCGAGGGCCGTTGACTCGGCTCGGCCACCGGTTTAA 1131 0.5712 MKKHHHHATLLLLLLVVVAVPSIPIAVAQSQPSPNEFTDPNLNNFNPSLAAIIVILVAALFVMAVFSVYVRHCADTPPNSVRPLTSARSRRVARGLDPAVIQTFPILEYSEVKIHKIGKEPLECAVCLCEFEDAETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPAESQDSDANNAAAAVPDPQMLTPDLEAQNDAVETAPEQQNSDSDRFLTEPEVLSVEKTLKRNRTRGSRSNRPRRFSKSHSTGHSIVQPGENMDRFTLRLPLEVRKQLINRELHRASSLIVLPREGSSRRGYRTGGEGSSRGKHSRRLDRSVKSDRWIFSVAAPFFARALSIRSPRVRNNDVERTSTSSTAPIMSPRAVDSARPPV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01527 376 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Viun6g01527 376 MobiDBLite consensus disorder prediction 351 365 - -
Viun6g01527 376 MobiDBLite consensus disorder prediction 349 376 - -
Viun6g01527 376 SMART ring_2 124 165 IPR001841 -
Viun6g01527 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 258 - -
Viun6g01527 376 MobiDBLite consensus disorder prediction 203 218 - -
Viun6g01527 376 Pfam Ring finger domain 123 166 IPR001841 -
Viun6g01527 376 SUPERFAMILY RING/U-box 117 172 - -
Viun6g01527 376 MobiDBLite consensus disorder prediction 201 260 - -
Viun6g01527 376 MobiDBLite consensus disorder prediction 220 234 - -
Viun6g01527 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 172 IPR013083 -
Viun6g01527 376 CDD RING-H2_EL5-like 123 166 - -
Viun6g01527 376 MobiDBLite consensus disorder prediction 235 249 - -
Viun6g01527 376 FunFam E3 ubiquitin-protein ligase ATL6 84 172 - -
Viun6g01527 376 MobiDBLite consensus disorder prediction 296 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01527 Viun-Chr6 23349303 23350736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01527 1 361 Rapid Response to Elicitors AT3G05200 41.379 3.52e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01527 K10664 - gmx:100781706 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01527 6 23349303 23350736 Viun6g01527 6 23349303 23350736 ECH
Viun6g01527 6 23349303 23350736 Viun7g02126 7 25947479 25949304 PCT