Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01519 ATGGATCATCAAGGGCATGGCCAGAACCCATCGATGGGGGTTGTTGGTAGTGGTCAATTAGCATATGGTTCTAACCCATATCAGCAAGGCCAAATAACTGGGCCACCGGGGTCGGTAGTGACATCGGTTGGGACCATTCAGTCTACTGGTCAACCTGCTGGAGCACAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAACACCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAATCAGTACCAAGAGATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGAATGATTTCAGCTGAGGCACCAGTCATATTTGCAAGGGCTTGTGAAATGTTCATCCTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAAAAAAATGACATTGCTGCAGCAATCACCAGGACTGACATCTTTGATTTCTTGGTTGACATTGTACCCCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGAACAATGCCTGTTGGAGGACCCGCTGATGCACTTCCATACTGCTACATGCCTCCTCAGCATGCTCCTCAAGTTGGAACTGGTGGTGTCATAATGGGTAAGCCTGTGATGGATCCGAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCTCAAATGTGGCCCCAGCCTCCAGACCAACGTCAACCATCTCCAGAACATTAG 780 0.4731 MDHQGHGQNPSMGVVGSGQLAYGSNPYQQGQITGPPGSVVTSVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALPYCYMPPQHAPQVGTGGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQPSPEH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01519 259 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g01519 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 63 195 - -
Viun6g01519 259 Pfam Core histone H2A/H2B/H3/H4 68 163 IPR007125 GO:0003677
Viun6g01519 259 MobiDBLite consensus disorder prediction 25 45 - -
Viun6g01519 259 FunFam Nuclear transcription factor Y subunit gamma 65 178 - -
Viun6g01519 259 Gene3D Histone, subunit A 62 178 IPR009072 GO:0046982
Viun6g01519 259 SUPERFAMILY Histone-fold 72 172 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01519 Viun-Chr6 23313029 23315722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01519 1 246 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.538 1.16e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Viun6g01519 CBFD_NFYB_HMF 5.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01519 K08066 - gmx:100527803 460.685