Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01498 ATGCAAGACATATTCGGATCAGTTCGCAAATCACTGGTATTCCGCGGTTCGCCGGAGAGCGACGAGACCTCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATACGAACTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCGTCTATTCATGAGGACGCTGCGCCTCCTATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTAGAAGAAGAAGTTAAATTACTTAAAGACCTTTCACATCCAAACATTGTTAGATATTTGGGTACGGTCACAGAAGAGGACACCCTAAATATTCTCTTGGAGTTTGTTCCTGGTGGATCCATATCATCGCTTTTGGGGAAGTTTGGGGCTTTCCCTGAGGCTGTAATAAGAACCTACACGAAGCAGCTACTACTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTGGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGGGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGTTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTCTCAGCTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGGTTTTGAGGTCATCAGCATCAGAACTGCTACAGCATCCCTTTGTAACTGGTGAACATATGAATTCTCTTACTCTGTCATCTAATGTCACGGAAAATTTTATAGCTTCATCACCATCATGTTCCCCAAATGATGAATCCATCCTTTGCTCTTCAACAGTAAATCCTCTGGACTCGGGAAATAAACAATTGTGGGGAATGAGCAATGATGATGATGATATGTGTGTGATTGACGACAAAGAAGAGTTCTCGCATAATGATGTTAAATACAAATCAATGATGTCAACTGATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTTCAGAACTGGAAACTCGAGAGGTCAATTTTGTCACAGATGAAAGTTACATGCCACCTGATCAGTCGGGGGATGGTAAGCAGCCAGATTTTTCCTTTCCGGGTGTTCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATCAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGGTGAGAGTACAAGTGATGATACTGCTTCTCGAAAATTTTTGAAATTACCTCCTAAAAGCAGGTCACCTAATCGAGTACCAATCAGCACACCATCTAAAGCCATCGATAGTACTGGAAGTCCTGGAAGTAATGGCCAGTCCTCATCAACTGTTGGCCATGTAAATAACCATACTTCTCAGGATATTCCAGCATCTCCACTTAATGAATGGAAAGGAGTGATAGTTGACTCTCAGCAGCAGCCTAGTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAATGGAAAGAAGAGCTTGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGTGCTTTACATCGGCAGAGGGAAGGAACAAGATTTGCTTCCCAGCAAATAAGAAACTCGTTAGAGCCTTCATACTGTGTTAACTACTGA 2001 0.4443 MQDIFGSVRKSLVFRGSPESDETSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSIHEDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVTEEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAVLFHIGTTKSHPPIPDHLSAAAKDFLLKCLQKEPVLRSSASELLQHPFVTGEHMNSLTLSSNVTENFIASSPSCSPNDESILCSSTVNPLDSGNKQLWGMSNDDDDMCVIDDKEEFSHNDVKYKSMMSTDIESFNPMSDPSDDWGCKFDASSELETREVNFVTDESYMPPDQSGDGKQPDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNGESTSDDTASRKFLKLPPKSRSPNRVPISTPSKAIDSTGSPGSNGQSSSTVGHVNNHTSQDIPASPLNEWKGVIVDSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQREGTRFASQQIRNSLEPSYCVNY 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01498 666 MobiDBLite consensus disorder prediction 506 654 - -
Viun6g01498 666 CDD STKc_MAPKKK 64 328 - -
Viun6g01498 666 FunFam Mitogen-activated protein kinase kinase kinase 2 64 357 - -
Viun6g01498 666 SMART serkin_6 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01498 666 MobiDBLite consensus disorder prediction 444 473 - -
Viun6g01498 666 Gene3D Transferase(Phosphotransferase) domain 1 64 359 - -
Viun6g01498 666 MobiDBLite consensus disorder prediction 603 625 - -
Viun6g01498 666 MobiDBLite consensus disorder prediction 536 578 - -
Viun6g01498 666 MobiDBLite consensus disorder prediction 585 602 - -
Viun6g01498 666 FunFam Serine/threonine-protein kinase STE11 61 155 - -
Viun6g01498 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Viun6g01498 666 ProSiteProfiles Protein kinase domain profile. 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01498 666 SUPERFAMILY Protein kinase-like (PK-like) 64 329 IPR011009 -
Viun6g01498 666 Pfam Protein kinase domain 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01498 666 Coils Coil 605 625 - -
Viun6g01498 666 MobiDBLite consensus disorder prediction 506 520 - -
Viun6g01498 666 Coils Coil 98 125 - -
Viun6g01498 666 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Viun6g01498 666 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 50 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01498 Viun-Chr6 23203393 23209383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01498 1 651 MAP Kinase Kinase Kinase AT1G54960 56.897 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun6g01498 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01498 K20606 - gmx:100807537 1142.1