Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01497 ATGAACAAAAGAGATAGAATGAGAGGGAGAGTGATATTGATGAAGAAAAATGTTTTGGACTTCAACGATTTCAGTGCCTCCTTGCTCGATCGTCTTCATGAGTTTATGGGAAAACGCGTTTCTCTTCAACTCATAAGCGCTTCTCATGCTCATCCTGTTGAAGGTAACGAGATGAAAGGTAAACTTGGAAAGCCTGCATATTTGGAAGATTGGATCACCACAATCACACCCTTGACCGCTGGTGAATCAGAATTTGGGGTCACATTCGATTGGGATGATGATGATGATGATTCTATAGGAACCCCAGGAGCTTTTTTAATAAGAAACCATCATCACACTGAGTTCTACCTGAAAAGCATGACACTTGAAAATGTTCCAGGCCATGGTGTCATCCACTTTAACTGCAACTCTTGGGTATACCCTGCACATAAGTATAAAAAGGATCGCATTTTCTTCAGCAACAAGGTATACCTTCCAAGTGAAACGCCACAACCACTTCTTAAGTATAGAGAAGAAGAACTAGAGAGTTTAAGAGGGGATGGAAGAGGGACCCTGCAAGAGTGGGATAGGGTGTATGACTATGCATACTACAATGATTTGAGTGATCCAGATAAGGGTGCACAATATGCTCGTCCAGTGCTGGGAGGGTCCTCTGAATATCCATACCCTCGAAGGGGAAGAACTGGTAGACCACCGGCAAAATCAGATGCCAAGAGTGAGAGTAGATTGAATTTGGCCATGAGCTTGGACATCTATGTTCCGAGGGATGAAAGATTTGGACACTTGAAATTGTCAGACTTTCTTGCTAGTGCAGTGAAGTCCATAGTTCAAGTTCTCAAACCTGAGCTGGAATCTCTATTTGACAGCACCCCTCATGAGTTTGATAGCTTTGAAGATGTGTTTAAACTCTATGAAGGTGGAATCAAGGTGCCTGAAGGCATACTTAAGAATGTTAGAGATAAAATCCCTGCAGAGCTTCTCAAAGAAATTCTCCGAACTGATGGTGAAAGGTTCCTCAAGTTTCCTGTGCCTCAAGTGATTAAAGAAGATAAGTCTGCATGGAGAACCGATGAAGAATTTGCTAGAGAGATGTTGGCTGGTGTAAACCCTGTTATCATTCGCTGCCTCCAAGAATTTCCACCAGCAAGTAAGCTAGATGCTAAAGTCTATGGTAACCAAACCAGTACAATACAAAAAGAGAACATTGAGAGCAACATGGATGGACTCACAGTAGATGAGGCTATCAAACACAAGAAGTTGTTCATATTAGATCACCATGATGCACTAATACCATATTTGAGGAGGATAAACTCCACTTCTACAAAGACTTATGCCAGCAGAACAATTCTTTTCTTGCAAAACGATGGAACTTTAAAGCCATTGGCTATTGAGTTGAGTTTGCCACACCCTGAAGGAGACCAATATGGTGTCATAAGTAAGGTTTACACTCCTGCAGATGAAGGTGTTGAAAATTCCATCTGGCAATTAGCTAAAGCTTATGTAGCAGTAAACGACTCAGGCTATCATCAGCTTATTACCCACTGGTTGCATACTCATGCAGTGATTGAACCATTCATAATAGCTGCAAACAGACAGCTCAGCGTGCTTCACCCTATTCATATACTTCTACATCCACACTTTCGTGACACCATGAACATAAATGCACTAGCAAGACAAATCCTCATCAACGCTGGTGGCTTTGTAGAGGCCACAGTTTTTCCATCAAAGTATTCCATGGAGATGTCATCTTTGATTTACAAGAACTGGAATTTCCCTGACCAAGCATTACCCACAGATCTCATCAAGAGAGGAATGGCTGTTAAAGATTCAAGTTCTCAACACGGCCTCCGACTTGTGATTGAGGATTATCCGTACGCTGTTGATGGGTTAGAGATTTGGTTTGCCATAAAGAACTGGGTTCAGGAATATTGCTCCTTTTACTACAAAGATGATGAAACAGTTAAAAAAGATCCAGAACTACAATCTTGGTGGAAGGAGTTAAGAGAGGAGGGTCACGGTGACAAGAAAAACGAGCCTTGGTGGCCAAAGATGCAGACTCGTGAAAACCTCATAGAAGTGTGTACTATCATCATATGGGTTGCTTCAGCTCTGCATGCATCCACCAACTTTGGCCAATACCCTTATGCAGGTTTCCTTCCAAACCGTCCAACCATAAGCCGAAGATTCATGCCTGAGGAAGAAACTCCTGAATATGATGAACTTGTGAACAACCCTGAGAAGGCTTTTCTGAAAACAATCACTGCACAGTTGCAGACCCTTATAGGCATTTCGCTCATAGAAATATTGTCTAAGCACTCTTCTGATGAGGTGTACCTTGGACAGAGAGAAACTCCTCACTGGACTTCTGATGTGGAACCATTGAAAGCGTTTGAGAGGTTTGGGGAAAAGCTGGCTCAGATTGGAGAAAGGATTGTGACAATGAACAATGATGGGAAACACAGAAACAGAGTTGGACCGGTTAACATGCCATACACTTTGCTCTATCCTAGCAGCAAAACTGGACTCACTGGCATGGGAATTCCCAACAGTGTCGCAATTTAG 2562 0.4243 MNKRDRMRGRVILMKKNVLDFNDFSASLLDRLHEFMGKRVSLQLISASHAHPVEGNEMKGKLGKPAYLEDWITTITPLTAGESEFGVTFDWDDDDDDSIGTPGAFLIRNHHHTEFYLKSMTLENVPGHGVIHFNCNSWVYPAHKYKKDRIFFSNKVYLPSETPQPLLKYREEELESLRGDGRGTLQEWDRVYDYAYYNDLSDPDKGAQYARPVLGGSSEYPYPRRGRTGRPPAKSDAKSESRLNLAMSLDIYVPRDERFGHLKLSDFLASAVKSIVQVLKPELESLFDSTPHEFDSFEDVFKLYEGGIKVPEGILKNVRDKIPAELLKEILRTDGERFLKFPVPQVIKEDKSAWRTDEEFAREMLAGVNPVIIRCLQEFPPASKLDAKVYGNQTSTIQKENIESNMDGLTVDEAIKHKKLFILDHHDALIPYLRRINSTSTKTYASRTILFLQNDGTLKPLAIELSLPHPEGDQYGVISKVYTPADEGVENSIWQLAKAYVAVNDSGYHQLITHWLHTHAVIEPFIIAANRQLSVLHPIHILLHPHFRDTMNINALARQILINAGGFVEATVFPSKYSMEMSSLIYKNWNFPDQALPTDLIKRGMAVKDSSSQHGLRLVIEDYPYAVDGLEIWFAIKNWVQEYCSFYYKDDETVKKDPELQSWWKELREEGHGDKKNEPWWPKMQTRENLIEVCTIIIWVASALHASTNFGQYPYAGFLPNRPTISRRFMPEEETPEYDELVNNPEKAFLKTITAQLQTLIGISLIEILSKHSSDEVYLGQRETPHWTSDVEPLKAFERFGEKLAQIGERIVTMNNDGKHRNRVGPVNMPYTLLYPSSKTGLTGMGIPNSVAI 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01497 853 FunFam Lipoxygenase 353 486 - -
Viun6g01497 853 Gene3D - 263 352 IPR027433 -
Viun6g01497 853 SUPERFAMILY Lipoxigenase 158 853 IPR036226 -
Viun6g01497 853 FunFam Lipoxygenase 263 352 - -
Viun6g01497 853 Gene3D - 158 262 - -
Viun6g01497 853 Gene3D - 353 486 - -
Viun6g01497 853 Gene3D PLAT/LH2 domain 1 157 - -
Viun6g01497 853 PANTHER LIPOXYGENASE 5 853 IPR000907 GO:0016702|GO:0034440|GO:0046872
Viun6g01497 853 ProSitePatterns Lipoxygenases iron-binding region signature 1. 509 523 IPR020833 GO:0016702|GO:0046872
Viun6g01497 853 FunFam Lipoxygenase 488 852 - -
Viun6g01497 853 SMART LH2_4 5 154 IPR001024 GO:0005515
Viun6g01497 853 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 6 157 IPR036392 GO:0005515
Viun6g01497 853 PRINTS Plant lipoxygenase signature 221 240 IPR001246 GO:0016491
Viun6g01497 853 PRINTS Plant lipoxygenase signature 339 355 IPR001246 GO:0016491
Viun6g01497 853 PRINTS Plant lipoxygenase signature 149 170 IPR001246 GO:0016491
Viun6g01497 853 PRINTS Plant lipoxygenase signature 188 204 IPR001246 GO:0016491
Viun6g01497 853 PRINTS Plant lipoxygenase signature 766 780 IPR001246 GO:0016491
Viun6g01497 853 PRINTS Plant lipoxygenase signature 123 141 IPR001246 GO:0016491
Viun6g01497 853 PRINTS Plant lipoxygenase signature 444 468 IPR001246 GO:0016491
Viun6g01497 853 PRINTS Plant lipoxygenase signature 291 312 IPR001246 GO:0016491
Viun6g01497 853 PRINTS Plant lipoxygenase signature 378 397 IPR001246 GO:0016491
Viun6g01497 853 MobiDBLite consensus disorder prediction 213 240 - -
Viun6g01497 853 Pfam Lipoxygenase 166 836 IPR013819 GO:0016702|GO:0046872
Viun6g01497 853 ProSiteProfiles PLAT domain profile. 22 153 IPR001024 GO:0005515
Viun6g01497 853 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 156 853 IPR013819 GO:0016702|GO:0046872
Viun6g01497 853 FunFam Lipoxygenase 158 262 - -
Viun6g01497 853 CDD PLAT_LH2 6 154 IPR042057 -
Viun6g01497 853 Pfam PLAT/LH2 domain 56 152 IPR001024 GO:0005515
Viun6g01497 853 Gene3D - 487 852 - -
Viun6g01497 853 PRINTS Lipoxygenase signature 509 526 IPR013819 GO:0016702|GO:0046872
Viun6g01497 853 PRINTS Lipoxygenase signature 491 508 IPR013819 GO:0016702|GO:0046872
Viun6g01497 853 PRINTS Lipoxygenase signature 529 549 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01497 Viun-Chr6 23191037 23196454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01497 6 853 Acyl Lipid Metabolism Gene Families AT1G55020 68.824 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01497 K15718 - gmx:100815550 1510.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01497 6 23191037 23196454 Viun6g01497 6 23191037 23196454 ECH
Viun6g01497 6 23191037 23196454 Viun7g02094 7 25740814 25754522 PCT