Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01494 ATGTTTGCTCCGGTTCCGGATGGGGCATGTGAGGGAAGTGGAGTTTCGGGATCCATTTCGATTCCTCAACGCTTTGTGTGGCCTTATGGAGGAAGAAGGGTGTTTTTGAGTGGTTCTTTCACGAGATGGTCAGATCATATAGCTATGTCTCCGATGGAGGGGTGCCCTGCTGTGTTTCAAGTTGTTTGCAACTTAATGCCGGGGTTTCATCAGTACAAATTTAATGTAGATGGTGAGTGGCGGCATGATGAGCAGCAGCCATCTGTAAGTGGAAGCTGTGGAGTAGTGAATACTATTTATTTAGTGAGAGAACCAGATATCTTACCTTCAATTTTAAGTAATGAAGCACCTGGTAGATCCCAAATGGAGATTGACAATATGGAAGCTAATTCCAGGATGCCCGTGTCTGATCTGGTGGTCTCTCGCCAGCGTATATCTGTATTCTTGTCTACACATACGGCTTATGATTTGCTTCCTGAGTCGGGGAAGATCATTGCCTTGGATATAAATTTACCTGTGAAGCAAGCATTCCATGTTCTTTATGAACAGGGCGTATCTATGGCTCCTCTATGGGATTTTAGCAGGAGTCAGTTTGTTGGAGTTCTTAGTGCAATGGACTTCATTCTAATACTGAAAGAGCTGGGAAATCATGGTTCGAATTTGACTCAAGAACAACTTGAGACTCATACTATAGCAGCCTGGAAAGAGGGAAAATTACAGCTACGCAGAACAGTTGATAGTAATGGAGGATCACATCCCTGGCGATTTGTTCATGCCGGACCACATGAATGTCTAAAGGACGTGGCTTTTAAGATTTTGCAAAACAAGGTGTCAACCATTCCTATCATCCATTCTTCTTCAGAGGATGGTTCATTTCCTCAACTGCTACATCTTGCTTCCCTATCAGGAATACTGAAAGGTATATGCAGACATTTTAAGCACTCCTTGAGTTCTTTGCCCATTCTTCAACATCCAGTGGGTTCAATACCTTTGGGTGTATGGATGCCTAAAGTTGGGGAACCAAATGGACGGCCACTAGCAATGCTGAGACCAAGTGCTTCTCTTGGTGCTGCTCTGTCAATGTTTGTTCAAGCTGAAGTTAGCTCAATACCGATTGTGGATGACAATGATTCTTTGCTAGACATTTATTCAAGAAGCGATATTACAGCATTGGCTAAAGATAAAGCATACGCTCGGACATCTCTGGAGGAAATTAGTATTCACCAGGCATTGCTTTTGGGACAAGATGCAAGTTCTCCTTATGGGCTTTACACCGGTCACAGATGTCACATGTGTTTGAGATCTGATTCGTTGCACAAAGTGATGGAGCGGCTGTCTATTCCTGGGGTTAGAAGACTTGTGGTTGTGGAGGCTGGGAGCAAGCGCGTGGAGGGAATTATTTCTTTAAGTGATGTGTTCAGATTCTTGTTAGGGTAG 1437 0.4377 MFAPVPDGACEGSGVSGSISIPQRFVWPYGGRRVFLSGSFTRWSDHIAMSPMEGCPAVFQVVCNLMPGFHQYKFNVDGEWRHDEQQPSVSGSCGVVNTIYLVREPDILPSILSNEAPGRSQMEIDNMEANSRMPVSDLVVSRQRISVFLSTHTAYDLLPESGKIIALDINLPVKQAFHVLYEQGVSMAPLWDFSRSQFVGVLSAMDFILILKELGNHGSNLTQEQLETHTIAAWKEGKLQLRRTVDSNGGSHPWRFVHAGPHECLKDVAFKILQNKVSTIPIIHSSSEDGSFPQLLHLASLSGILKGICRHFKHSLSSLPILQHPVGSIPLGVWMPKVGEPNGRPLAMLRPSASLGAALSMFVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDKAYARTSLEEISIHQALLLGQDASSPYGLYTGHRCHMCLRSDSLHKVMERLSIPGVRRLVVVEAGSKRVEGIISLSDVFRFLLG 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01494 478 CDD E_set_AMPKbeta_like_N 22 102 - -
Viun6g01494 478 Pfam CBS domain 344 389 IPR000644 -
Viun6g01494 478 Pfam CBS domain 429 477 IPR000644 -
Viun6g01494 478 Pfam Glycogen recognition site of AMP-activated protein kinase 21 106 IPR032640 -
Viun6g01494 478 SUPERFAMILY E set domains 22 103 IPR014756 -
Viun6g01494 478 ProSiteProfiles CBS domain profile. 335 401 IPR000644 -
Viun6g01494 478 SUPERFAMILY CBS-domain pair 344 477 IPR046342 -
Viun6g01494 478 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 133 476 - -
Viun6g01494 478 Gene3D - 314 477 IPR046342 -
Viun6g01494 478 Gene3D Immunoglobulins 18 103 IPR013783 -
Viun6g01494 478 SUPERFAMILY CBS-domain pair 144 314 IPR046342 -
Viun6g01494 478 Gene3D - 138 313 IPR046342 -
Viun6g01494 478 ProSiteProfiles CBS domain profile. 157 219 IPR000644 -
Viun6g01494 478 SMART cbs_1 345 393 IPR000644 -
Viun6g01494 478 SMART cbs_1 428 477 IPR000644 -
Viun6g01494 478 SMART cbs_1 163 212 IPR000644 -
Viun6g01494 478 FunFam Sucrose nonfermenting 4-like protein 18 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01494 Viun-Chr6 23176893 23184208 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01494 - - gmx:100778117 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01494 6 23176893 23184208 Viun6g01494 6 23176893 23184208 ECH
Viun6g01494 6 23176893 23184208 Viun7g02092 7 25726439 25736128 PCT