Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01490 ATGTCAAACTCAAACATCACAAGCTGTGATAGTTGGAGCTTCTCCACAGAGAACACTGCAGAAGATGCAGCACCACTTAAACAGCAGCAACTGGAGATGCTTCCCCAAAACCATAGTCCAAATTCAAACACTTCAACCACAACAAATAACAGCAATGACTCAAACACAATTTCACAACCACCTCTCAAGAAGAAAAGAAACCTACCAGGAAATCCAGACCCAAGTGCCGAAGTGGTAGCTCTGTCGCCAAACACCCTGGTGGCCACAAACAGGTTCGTGTGCGAAATATGCAACAAAGGGTTTCAGAGGGATCAGAACCTTCAATTGCACCGTCGAGGGCACAATCTACCGTGGAAGCTGAAACTCAGAACCACCACGGAAGTGAAAAAGCGCGTTTACGTTTGCCCCGAACCCTCCTGTGTCCACCACAACCCAGCTCGAGCGCTGGGCGATCTCACCGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAAAAATGCTCAAAGAAATACGCTGTTCATTCTGACTGGAAAGCGCATTCCAAAATTTGTGGAACCAAGGAATACAAATGTGACTGTGGCACCATTTTTTCCAGAAGAGACAGTTTCATCACACACAGAGCTTTCTGCGATGCACTCAGTGATGAGAACAGCAAATTCAACGAAGCAGGACAATTGCAAAGTATGTTGCATGGTTCAAACCTGCAACCACCGATGATCCCAAACCTAGCAGCATCACTACCAATGAAGCAACCATTACCACTTCCTCACGAACTCATTGCAGCAATTCCAGCAAAACCCTTCAACAACAACATGGCAGCATTGCCGAGAAGCTTTTCATCCACCTCTTCTCCCTCTCAACTGTGCTCAAACTCACCAAACATCAACATGTTTGAGGAAAATGCTCAGACAAACATGTCTGCCACAGCACTGCTTCAAAAAGCTGCACAAATGGGCGCAACAGTGAATGGTAACAGCAACAGCATGATGACTGAAACGGGCTTTTCTACTAGCATGCCACCACCATCGTATGGGGTCATGAACCAGCACATTCACAGCGCTCAACAAGACCTGTCTCAGTATAACTTCCATGCAAATGGGACGGTGATGGACGGTGGTGGCAATGGCATGGGAGGAATTATGAGTGGTTTGGATATGTTTAATGCTATTTTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAACAAAAACAGCTATGGTGGTGTTTTGCATGCAATGAGTAATGGTAGGTCAAGTTCCATTGATGTTGGTGGAACTAAAGGGAGTGAGGATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGAGGAGTTGGTGGTGTTGGTGGTGGTGGTGGTGATGGAAGTTTCTTTGGTGGTGAACAATCTGAACTAAAGATTGAATATGGAGAAATGAGTCAAATCAGAATCCAGGGTTTGAACCATTTTCAGCAACAAACAGCGGCATATGAAAATTGA 1506 0.4555 MSNSNITSCDSWSFSTENTAEDAAPLKQQQLEMLPQNHSPNSNTSTTTNNSNDSNTISQPPLKKKRNLPGNPDPSAEVVALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSDENSKFNEAGQLQSMLHGSNLQPPMIPNLAASLPMKQPLPLPHELIAAIPAKPFNNNMAALPRSFSSTSSPSQLCSNSPNINMFEENAQTNMSATALLQKAAQMGATVNGNSNSMMTETGFSTSMPPPSYGVMNQHIHSAQQDLSQYNFHANGTVMDGGGNGMGGIMSGLDMFNAILDQSKALSKIIEQNNKNSYGGVLHAMSNGRSSSIDVGGTKGSEDVMTLDLLGIGGGGVGGVGGGGGDGSFFGGEQSELKIEYGEMSQIRIQGLNHFQQQTAAYEN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01490 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 471 IPR031140 -
Viun6g01490 501 Gene3D Classic Zinc Finger 88 115 - -
Viun6g01490 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Viun6g01490 501 SMART c2h2final6 168 188 IPR013087 -
Viun6g01490 501 SMART c2h2final6 133 163 IPR013087 -
Viun6g01490 501 SMART c2h2final6 92 114 IPR013087 -
Viun6g01490 501 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
Viun6g01490 501 Gene3D Classic Zinc Finger 147 225 - -
Viun6g01490 501 FunFam protein indeterminate-domain 12-like 71 139 - -
Viun6g01490 501 MobiDBLite consensus disorder prediction 1 76 - -
Viun6g01490 501 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Viun6g01490 501 MobiDBLite consensus disorder prediction 1 62 - -
Viun6g01490 501 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Viun6g01490 501 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01490 Viun-Chr6 23128180 23131854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01490 63 225 IDZ Gene Family AT5G66730 85.890 8.31e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun6g01490 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01490 - - pvu:PHAVU_006G090800g 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01490 6 23128180 23131854 Viun7g02085 7 25638466 25642351 ECH
Viun6g01490 6 23128180 23131854 Viun6g01490 6 23128180 23131854 ECH
Viun6g01490 6 23128180 23131854 Viun7g02085 7 25638466 25642351 PCT