LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g01454	AAAAAAAGAATAACCATGGGAGCTGATGGACAGAAGCAGAGACTCATCATCATTGGCGTTTCCACCTTCTTGCTGGTGGCTATGGTGGTAGCCGTGACGGTTAGCGTGACCCTGAACAACAAGGGAGCAAGCGACGATGAAAATGAAGAAAGAAAATCACACGTGGCTTCCTCTCTGAAAGCGGTGAAAACCCTTTGCGCACCCACGGACTACCAGAAAGAATGCGAGGACAGTCTCAATGCAAACGCCGGCAACGTCACCGATCCCAGGGAACTCATCAAAATGGCCTTCAACATCACCATCACCAGAATCAGCCACGGGCTCGGGGAAACCAAGCTCATGCACGACGTCGAGAGCGACCCCAGAACCAAGGAGGCCCTCGACACCTGCAAGCAACTCATGAACCTCTCCATCGAGGAGTTCAACCGCTCCCTCCAGAGATTCAGCAAGTTCGACCTCAACAACCTCGACCGCATCCTCACCAGTCTCAAGGTCTGGCTCAGCGGCGCCGTCACCTACCAGGAGACATGCCTTGACGCCTTCGAGAACACCACCACCGACGCCGGAAAGAAGATGCAGGAGCTCTTGCAAACCGCCATGCACATGACCAGCAACGGTCTCGCTATCATCTCCGAGCTGGCCAAGACTCTCTCCGAGATGCAGCTATCCAGGTCCGGCCGCCGCCTCATGACGGCCGACGACGATTTGCCCATTCTTGGCCACGACGACGACTTTGACCTTCCCGACTGGGTTGAGAACCGCTTCGGCGTTCGCAGACTCATGAAAATGACTGGACGCAAACGCATGGCCCATGTGGTGGTTGCCAAGGATGGCAGCGGAAATTTCACCACCATCAACGACGCCTTGAAGAGCGTGCCCATGAAGAACCTGAGGCCCTATATCATCTACATCAAGGAGGGCGTTTACGACGAGTACGTTGAAGTTTTCAGAAACATGACCCATGTCGTCTTTATTGGTGATGGTGGAAGGAAGTCAAGGATCACAGGAAGCAAAAACTTCGTCGATGGTGTTGGAACCTACAAAACCGCCAGTGCTGCCATTATCGGAGATTTCTTCGTCGCCATTGGTATGGGATTCGAGAACACCGCCGGCGCTGAAAAACATCAAGCCGTGGCATTGAGGGTTCAATCCGACAGGTCCATCTTCTACAAGTGCCGGATGGATGGGTATCAAGACACACTTTACGCCCACGCAATGCGTCAATTCTACCGCGACTGCACCATTTCTGGCACCATCGACTTTGTGTTCGGCGATGCAGTGGCTGTGCTCCAGAACTGCACATTCGTTGTGAGAAAGCCGTTGGCAAACCAGCAATGCATTGTGACGGCACAGGGCAGGAAGGAGAAGAACCAGCCATCGGGTATTGTGATCCACGGAGGGTCCATTGTTTCAGACCCACTGTACTACCCAGTTAGGTTCGACAACAAGGCTTACTTGGCTCGCCCATGGAAGAACTTCTCAAGGACCATCTTCATGGACTCTTTCATCGATGACTTGATCACCCCCGATGGCTACATGCCATGGCAGACACTGGAAGGTTTAAGCGGCATGGACACTTGTTTCTACGCTGAGATCAACAACCGTGGCCCCGGTGCAGACAAATCGAAGCGCGTGAAATGGGAAGGAATCAAGGCCCTTACCAATGACGTAGCAACAACATTCATGCCATCACCGTTCTTCCACGGAGATGACTGGATTAGGGTCACAAGGGTTCCCTACGACTCTGGCCTGCCCTCCCCCACTCACTGA	1770	0.5339	KKRITMGADGQKQRLIIIGVSTFLLVAMVVAVTVSVTLNNKGASDDENEERKSHVASSLKAVKTLCAPTDYQKECEDSLNANAGNVTDPRELIKMAFNITITRISHGLGETKLMHDVESDPRTKEALDTCKQLMNLSIEEFNRSLQRFSKFDLNNLDRILTSLKVWLSGAVTYQETCLDAFENTTTDAGKKMQELLQTAMHMTSNGLAIISELAKTLSEMQLSRSGRRLMTADDDLPILGHDDDFDLPDWVENRFGVRRLMKMTGRKRMAHVVVAKDGSGNFTTINDALKSVPMKNLRPYIIYIKEGVYDEYVEVFRNMTHVVFIGDGGRKSRITGSKNFVDGVGTYKTASAAIIGDFFVAIGMGFENTAGAEKHQAVALRVQSDRSIFYKCRMDGYQDTLYAHAMRQFYRDCTISGTIDFVFGDAVAVLQNCTFVVRKPLANQQCIVTAQGRKEKNQPSGIVIHGGSIVSDPLYYPVRFDNKAYLARPWKNFSRTIFMDSFIDDLITPDGYMPWQTLEGLSGMDTCFYAEINNRGPGADKSKRVKWEGIKALTNDVATTFMPSPFFHGDDWIRVTRVPYDSGLPSPTH	589

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g01454	589	ProSitePatterns	Pectinesterase signature 1.	296	315	IPR018040	-
	Viun6g01454	589	Gene3D	-	266	584	IPR012334	-
	Viun6g01454	589	PANTHER	PECTINESTERASE	22	574	-	-
	Viun6g01454	589	SMART	PMEI_2	57	209	IPR006501	GO:0004857
	Viun6g01454	589	Gene3D	Invertase/pectin methylesterase inhibitor family protein	57	215	IPR035513	-
	Viun6g01454	589	Pfam	Plant invertase/pectin methylesterase inhibitor	61	209	IPR006501	GO:0004857
	Viun6g01454	589	CDD	PMEI-like_3	64	215	-	-
	Viun6g01454	589	SUPERFAMILY	Pectin lyase-like	271	582	IPR011050	-
	Viun6g01454	589	Pfam	Pectinesterase	271	570	IPR000070	GO:0030599\|GO:0042545
	Viun6g01454	589	FunFam	Pectinesterase	58	214	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g01454	Viun-Chr6	22883369	22885445	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g01454	11	584	Carbohydrate Esterase	AT3G05610	47.743	0.0	583

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g01454	K01051		-	gmx:100801686	959.133

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