Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01454 AAAAAAAGAATAACCATGGGAGCTGATGGACAGAAGCAGAGACTCATCATCATTGGCGTTTCCACCTTCTTGCTGGTGGCTATGGTGGTAGCCGTGACGGTTAGCGTGACCCTGAACAACAAGGGAGCAAGCGACGATGAAAATGAAGAAAGAAAATCACACGTGGCTTCCTCTCTGAAAGCGGTGAAAACCCTTTGCGCACCCACGGACTACCAGAAAGAATGCGAGGACAGTCTCAATGCAAACGCCGGCAACGTCACCGATCCCAGGGAACTCATCAAAATGGCCTTCAACATCACCATCACCAGAATCAGCCACGGGCTCGGGGAAACCAAGCTCATGCACGACGTCGAGAGCGACCCCAGAACCAAGGAGGCCCTCGACACCTGCAAGCAACTCATGAACCTCTCCATCGAGGAGTTCAACCGCTCCCTCCAGAGATTCAGCAAGTTCGACCTCAACAACCTCGACCGCATCCTCACCAGTCTCAAGGTCTGGCTCAGCGGCGCCGTCACCTACCAGGAGACATGCCTTGACGCCTTCGAGAACACCACCACCGACGCCGGAAAGAAGATGCAGGAGCTCTTGCAAACCGCCATGCACATGACCAGCAACGGTCTCGCTATCATCTCCGAGCTGGCCAAGACTCTCTCCGAGATGCAGCTATCCAGGTCCGGCCGCCGCCTCATGACGGCCGACGACGATTTGCCCATTCTTGGCCACGACGACGACTTTGACCTTCCCGACTGGGTTGAGAACCGCTTCGGCGTTCGCAGACTCATGAAAATGACTGGACGCAAACGCATGGCCCATGTGGTGGTTGCCAAGGATGGCAGCGGAAATTTCACCACCATCAACGACGCCTTGAAGAGCGTGCCCATGAAGAACCTGAGGCCCTATATCATCTACATCAAGGAGGGCGTTTACGACGAGTACGTTGAAGTTTTCAGAAACATGACCCATGTCGTCTTTATTGGTGATGGTGGAAGGAAGTCAAGGATCACAGGAAGCAAAAACTTCGTCGATGGTGTTGGAACCTACAAAACCGCCAGTGCTGCCATTATCGGAGATTTCTTCGTCGCCATTGGTATGGGATTCGAGAACACCGCCGGCGCTGAAAAACATCAAGCCGTGGCATTGAGGGTTCAATCCGACAGGTCCATCTTCTACAAGTGCCGGATGGATGGGTATCAAGACACACTTTACGCCCACGCAATGCGTCAATTCTACCGCGACTGCACCATTTCTGGCACCATCGACTTTGTGTTCGGCGATGCAGTGGCTGTGCTCCAGAACTGCACATTCGTTGTGAGAAAGCCGTTGGCAAACCAGCAATGCATTGTGACGGCACAGGGCAGGAAGGAGAAGAACCAGCCATCGGGTATTGTGATCCACGGAGGGTCCATTGTTTCAGACCCACTGTACTACCCAGTTAGGTTCGACAACAAGGCTTACTTGGCTCGCCCATGGAAGAACTTCTCAAGGACCATCTTCATGGACTCTTTCATCGATGACTTGATCACCCCCGATGGCTACATGCCATGGCAGACACTGGAAGGTTTAAGCGGCATGGACACTTGTTTCTACGCTGAGATCAACAACCGTGGCCCCGGTGCAGACAAATCGAAGCGCGTGAAATGGGAAGGAATCAAGGCCCTTACCAATGACGTAGCAACAACATTCATGCCATCACCGTTCTTCCACGGAGATGACTGGATTAGGGTCACAAGGGTTCCCTACGACTCTGGCCTGCCCTCCCCCACTCACTGA 1770 0.5339 KKRITMGADGQKQRLIIIGVSTFLLVAMVVAVTVSVTLNNKGASDDENEERKSHVASSLKAVKTLCAPTDYQKECEDSLNANAGNVTDPRELIKMAFNITITRISHGLGETKLMHDVESDPRTKEALDTCKQLMNLSIEEFNRSLQRFSKFDLNNLDRILTSLKVWLSGAVTYQETCLDAFENTTTDAGKKMQELLQTAMHMTSNGLAIISELAKTLSEMQLSRSGRRLMTADDDLPILGHDDDFDLPDWVENRFGVRRLMKMTGRKRMAHVVVAKDGSGNFTTINDALKSVPMKNLRPYIIYIKEGVYDEYVEVFRNMTHVVFIGDGGRKSRITGSKNFVDGVGTYKTASAAIIGDFFVAIGMGFENTAGAEKHQAVALRVQSDRSIFYKCRMDGYQDTLYAHAMRQFYRDCTISGTIDFVFGDAVAVLQNCTFVVRKPLANQQCIVTAQGRKEKNQPSGIVIHGGSIVSDPLYYPVRFDNKAYLARPWKNFSRTIFMDSFIDDLITPDGYMPWQTLEGLSGMDTCFYAEINNRGPGADKSKRVKWEGIKALTNDVATTFMPSPFFHGDDWIRVTRVPYDSGLPSPTH 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01454 589 ProSitePatterns Pectinesterase signature 1. 296 315 IPR018040 -
Viun6g01454 589 Gene3D - 266 584 IPR012334 -
Viun6g01454 589 PANTHER PECTINESTERASE 22 574 - -
Viun6g01454 589 SMART PMEI_2 57 209 IPR006501 GO:0004857
Viun6g01454 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 215 IPR035513 -
Viun6g01454 589 Pfam Plant invertase/pectin methylesterase inhibitor 61 209 IPR006501 GO:0004857
Viun6g01454 589 CDD PMEI-like_3 64 215 - -
Viun6g01454 589 SUPERFAMILY Pectin lyase-like 271 582 IPR011050 -
Viun6g01454 589 Pfam Pectinesterase 271 570 IPR000070 GO:0030599|GO:0042545
Viun6g01454 589 FunFam Pectinesterase 58 214 - -
Viun6g01454 589 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Viun6g01454 589 NCBIfam pectinesterase inhibitor domain 57 213 IPR006501 GO:0004857
Viun6g01454 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 213 IPR035513 -
Viun6g01454 589 FunFam Pectinesterase 266 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01454 Viun-Chr6 22883369 22885445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01454 11 584 Carbohydrate Esterase AT3G05610 47.743 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01454 K01051 - gmx:100801686 959.133