Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01453 ATGGCTATTTCCAAGCTATCCTTGCGCTTATTCTTGGTCTCTTTCCTAAGCATTTTCTGCAACTCTGCATTTTCTGTATCCTCCTCGGTCTCCTCCGATACCATTTGCAACCTCACACCATATCCATCATTCTGCGAATCCAACTCACCTAATGGCCATGGTGATATACACGAATATGGTCGTTTTTTCGTAGAGAAATCCTTGTCATCCTCAAAGATGTTTTTCTCATTACTCTCTCAATACCTTAAATCTTCATCCAAGTTCTCAAACTCCACAATCCTTGCCCTGCAAGATTGTCACCTTCTACTTGACCTAAACAAGCGTTTCTTGTCCAAGACCCTTAAAACCATCAATTCCACGGATACCCTCGGTGGCTCAGAAGATGAAAACTTCCACACTTTGCTCAGTGCTACACTGACCAACCAAGACACTTGCTTAAACAGCCTTCAAGAAACAACCTCAAACCCCGACAAAGACCTACTGACACACCTTTCCAACGGAACCAAGCTTTATAGCATATCTCTTGCAATCTTCAAGAGGGGATGGAAGGCCAAGAACAACACAGAGAAAAAACTTGGGAGAAATATGTGGGAACAGAGGCTGTACGAGCTAATCAGAAGAAGAGGAAGAAAACTGCTTCAGTTGGGTGTAGACAACAACGTTGTAGTTAACCAAAGCGTGGTGGTGAACCCAGACGGTTCTGGAAACTACACAACAATCAATGATGCAGTGGCTGCTGCTCCAAATAACTCACAGGGAAGTAACGGGTTTTTCGTGATTCATGTGGTGGGTGGAGTGTATGAAGAGTACGTTTCTATTCCCAGAGAGAAGCAGTACCTGATGATGATAGGTGATGGAATAAACCAGACCATAATCACGGGCAATCACAGCGTGGTTGATGGTTGGACTACTTTCAATTCTGCTACATTCGCCGTGATTGCTAAAGGTTTTGTGGCAATCAACATAACATTCCGCAACACAGCAGGAGCAATCAAGCACCAAGCAGTAGCCCTCAGAAGCGGAGCAGACCTGTCTGCGTTTTACAATTGTAGCTTTGAAGGGTACCAAGACACCTTATACACCCATTCTCTTCGGCAATTCTACAGAAACTGTGATATTTATGGTACAGTGGACTTCATATTTGGTAATGCAGCAGTGGTCTTGCAAAACTGTAACATGTACCCTAGACTCCCAATGCAGAACCAATTCAATGCCATTACAGCACAGGGTAGAACTGACGTGAACCAGAATACTGGAACCTCCATACACAATTGTACCATAACAGCGGCAAGTGATTTGGCCGGAAGTAATGGCACCACAAAAACGTACCTCGGAAGACCCTGGAAGCAATATTCACAAACAGTTTATATGCAGTCTTTCATGGACAGTTTGATAGATCCACTGGGTTGGGTAGCTTGGTCAGGGGACTTTGCTTTGGACACCCTTTATTATGCGGAATTTGATAATCTCGGTCCTGGATCTGATACTAGTAATAGGGTTACTTGGCCTGGGTACCATGTCATCAATGCCACAGAAGCAGTTAATTTTACTGTTTCTAATTTTATACTAGGTGGTATCTGGCTTCCTGCAACAGGAGTACCTTACTACCCTGATTTACTTACACCTTAG 1629 0.4377 MAISKLSLRLFLVSFLSIFCNSAFSVSSSVSSDTICNLTPYPSFCESNSPNGHGDIHEYGRFFVEKSLSSSKMFFSLLSQYLKSSSKFSNSTILALQDCHLLLDLNKRFLSKTLKTINSTDTLGGSEDENFHTLLSATLTNQDTCLNSLQETTSNPDKDLLTHLSNGTKLYSISLAIFKRGWKAKNNTEKKLGRNMWEQRLYELIRRRGRKLLQLGVDNNVVVNQSVVVNPDGSGNYTTINDAVAAAPNNSQGSNGFFVIHVVGGVYEEYVSIPREKQYLMMIGDGINQTIITGNHSVVDGWTTFNSATFAVIAKGFVAINITFRNTAGAIKHQAVALRSGADLSAFYNCSFEGYQDTLYTHSLRQFYRNCDIYGTVDFIFGNAAVVLQNCNMYPRLPMQNQFNAITAQGRTDVNQNTGTSIHNCTITAASDLAGSNGTTKTYLGRPWKQYSQTVYMQSFMDSLIDPLGWVAWSGDFALDTLYYAEFDNLGPGSDTSNRVTWPGYHVINATEAVNFTVSNFILGGIWLPATGVPYYPDLLTP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01453 542 ProSitePatterns Pectinesterase signature 2. 373 382 IPR033131 -
Viun6g01453 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Viun6g01453 542 Gene3D - 220 539 IPR012334 -
Viun6g01453 542 CDD PMEI-like_3 34 183 - -
Viun6g01453 542 PANTHER PECTINESTERASE 20 529 - -
Viun6g01453 542 Pfam Pectinesterase 227 524 IPR000070 GO:0030599|GO:0042545
Viun6g01453 542 SUPERFAMILY Pectin lyase-like 224 537 IPR011050 -
Viun6g01453 542 SMART PMEI_2 27 177 IPR006501 GO:0004857
Viun6g01453 542 FunFam Pectinesterase 220 539 - -
Viun6g01453 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 180 IPR035513 -
Viun6g01453 542 Pfam Plant invertase/pectin methylesterase inhibitor 33 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01453 Viun-Chr6 22879659 22882115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01453 6 541 Carbohydrate Esterase AT4G02330 54.325 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01453 K01051 - gmx:100801141 839.336