LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g01452	ATGGCCATGCTTGGTTTCCTTTTCATTGTCGTGCTTTTACCCTCCTTTAAGGCTCTCTCATATGAACCCATTCACTCAGAAATCCAAACCCAAGACATGCAAGCATTGATTGCACAAGCATGCATGGACATTGAAAACCAAAACTCCTGCCTCACAAACATCCACAACGAGCTCACTAAAATAGGCCCTCCAAGCCCCACTTCAGTGATGAGTGCAGCACTGAAGGCCACACTCAACGAAGCACTAGTGGCCATCGACAACATGACAAAGATCACCACCTTCTCCGTCAGCTACCGCGAGCAACAAGCCATAGAAGACTGCAAGGAGCTCTTGGATTTCTCAGTTTCTGAGCTCGCATGGTCCCTGGGAGAGATGAGGAGAATTCGCGGAGGAGACACCAACGTGCAACACGAGGGCAACCTCGAAGCGTGGCTCAGTGCTGCACTCAGCAACCAAGACACGTGCCTTGAAGGGTTCGAAGGAACAGACAGACGCCTCGAGAGTTACATCAGTGGAAGCTTGACACAAGTCACACAACTCATCAGCAATGTTCTGTCCCTGTACACGCAGTTGCATACCTTACCCTTTAAGCCTCCAAGAAACAAAACTATTGCAGAATCTGATGGAACCTCAGAGTTTCCTGAATGGATGAGTGAGGGTGATCAAGAGTTACTCAGAGCCAAGCCACATGGTGTGCGTGCGGACGCAGTTGTTGCTTTGGATGGGAGTGGTCACTATCGCTCCATCGCCGAAGCTGTTAATGCAGCTCCGAGTCACAGTGCAAGAAGGTATATTATTTACGTGAAAAAGGGACTTTACAAGGAGAATGTTGACATGAAGAAGAAGATGACCAACATCATGCTCGTCGGAGATGGTATAGGCCAAACCATTATCACCAGCAACCGGAATTTCATGCAGGGATGGACCACTTTTCGAACTGCCACGCTTGCTGTGTCTGGGAAGGGTTTCATTGCAAGGGACATGTCGTTCCGGAACACAGCAGGGCCGGTGAACCATCAAGCGGTGGCGCTGCGTGTGGATTCAGACCAATCAGCCTTCTACAGGTGCAGTGTGGAAGGGCACCAAGACACGCTCTACGCTCACTCTCTGCGACAGTTCTACCGTGAGTGCGAAATCTATGGCACCATAGACTTCATTTTCGGAAACGGTGCTGCAGTGCTGCAAAACTGCAAAATATACACCAGAGTCCCACTTCCCTTGCAGAAGGTTACAATCACGGCCCAGGGCAGAAAAAGCCCACACCAGTCCACGGGCTTCACCATCCAGGACAGCTATATTCTGGCCACCCAGCCCACCTACCTGGGCCGGCCCTGGAAACAATACTCTAGGACGGTTTACATTAACACTTACATGAGTGGGCTTGTCCAGCCCCGAGGCTGGCTTGAGTGGTTCGGAAACTTTGCCCTCAACACTTTGTGGTACGGTGAGTACAGAAATTATGGGCCTGGTGCATCCCTCTCGGGCCGGGTCAGATGGCCCGGTTATCATGTAATTAAAGATGCTTCCACCGCTAGTTTTTTCACTGTTCAGAGGTTCATTAATGGTGACACGTGGCTGCCTAGGACAGGTGTCAAGTTCACAGCAGGTCTCACCAATTGA	1620	0.5056	MAMLGFLFIVVLLPSFKALSYEPIHSEIQTQDMQALIAQACMDIENQNSCLTNIHNELTKIGPPSPTSVMSAALKATLNEALVAIDNMTKITTFSVSYREQQAIEDCKELLDFSVSELAWSLGEMRRIRGGDTNVQHEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHTLPFKPPRNKTIAESDGTSEFPEWMSEGDQELLRAKPHGVRADAVVALDGSGHYRSIAEAVNAAPSHSARRYIIYVKKGLYKENVDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYILATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWFGNFALNTLWYGEYRNYGPGASLSGRVRWPGYHVIKDASTASFFTVQRFINGDTWLPRTGVKFTAGLTN	539

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g01452	539	Gene3D	Invertase/pectin methylesterase inhibitor family protein	33	192	IPR035513	-
	Viun6g01452	539	PANTHER	PECTINESTERASE	11	527	-	-
	Viun6g01452	539	Gene3D	-	230	537	IPR012334	-
	Viun6g01452	539	CDD	PMEI-like_4	64	191	-	-
	Viun6g01452	539	NCBIfam	pectinesterase inhibitor domain	6	192	IPR006501	GO:0004857
	Viun6g01452	539	Pfam	Plant invertase/pectin methylesterase inhibitor	36	187	IPR006501	GO:0004857
	Viun6g01452	539	SUPERFAMILY	Pectin lyase-like	232	536	IPR011050	-
	Viun6g01452	539	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	36	191	IPR035513	-
	Viun6g01452	539	ProSitePatterns	Pectinesterase signature 2.	379	388	IPR033131	-
	Viun6g01452	539	FunFam	Pectinesterase	229	537	-	-

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g01452	Viun-Chr6	22873544	22875857	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g01452	8	539	Carbohydrate Esterase	AT3G05620	64.338	0.0	712

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g01452	K01051		-	gmx:100810565	1002.66

Showing 1 to 1 of 1 entries