Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01452 ATGGCCATGCTTGGTTTCCTTTTCATTGTCGTGCTTTTACCCTCCTTTAAGGCTCTCTCATATGAACCCATTCACTCAGAAATCCAAACCCAAGACATGCAAGCATTGATTGCACAAGCATGCATGGACATTGAAAACCAAAACTCCTGCCTCACAAACATCCACAACGAGCTCACTAAAATAGGCCCTCCAAGCCCCACTTCAGTGATGAGTGCAGCACTGAAGGCCACACTCAACGAAGCACTAGTGGCCATCGACAACATGACAAAGATCACCACCTTCTCCGTCAGCTACCGCGAGCAACAAGCCATAGAAGACTGCAAGGAGCTCTTGGATTTCTCAGTTTCTGAGCTCGCATGGTCCCTGGGAGAGATGAGGAGAATTCGCGGAGGAGACACCAACGTGCAACACGAGGGCAACCTCGAAGCGTGGCTCAGTGCTGCACTCAGCAACCAAGACACGTGCCTTGAAGGGTTCGAAGGAACAGACAGACGCCTCGAGAGTTACATCAGTGGAAGCTTGACACAAGTCACACAACTCATCAGCAATGTTCTGTCCCTGTACACGCAGTTGCATACCTTACCCTTTAAGCCTCCAAGAAACAAAACTATTGCAGAATCTGATGGAACCTCAGAGTTTCCTGAATGGATGAGTGAGGGTGATCAAGAGTTACTCAGAGCCAAGCCACATGGTGTGCGTGCGGACGCAGTTGTTGCTTTGGATGGGAGTGGTCACTATCGCTCCATCGCCGAAGCTGTTAATGCAGCTCCGAGTCACAGTGCAAGAAGGTATATTATTTACGTGAAAAAGGGACTTTACAAGGAGAATGTTGACATGAAGAAGAAGATGACCAACATCATGCTCGTCGGAGATGGTATAGGCCAAACCATTATCACCAGCAACCGGAATTTCATGCAGGGATGGACCACTTTTCGAACTGCCACGCTTGCTGTGTCTGGGAAGGGTTTCATTGCAAGGGACATGTCGTTCCGGAACACAGCAGGGCCGGTGAACCATCAAGCGGTGGCGCTGCGTGTGGATTCAGACCAATCAGCCTTCTACAGGTGCAGTGTGGAAGGGCACCAAGACACGCTCTACGCTCACTCTCTGCGACAGTTCTACCGTGAGTGCGAAATCTATGGCACCATAGACTTCATTTTCGGAAACGGTGCTGCAGTGCTGCAAAACTGCAAAATATACACCAGAGTCCCACTTCCCTTGCAGAAGGTTACAATCACGGCCCAGGGCAGAAAAAGCCCACACCAGTCCACGGGCTTCACCATCCAGGACAGCTATATTCTGGCCACCCAGCCCACCTACCTGGGCCGGCCCTGGAAACAATACTCTAGGACGGTTTACATTAACACTTACATGAGTGGGCTTGTCCAGCCCCGAGGCTGGCTTGAGTGGTTCGGAAACTTTGCCCTCAACACTTTGTGGTACGGTGAGTACAGAAATTATGGGCCTGGTGCATCCCTCTCGGGCCGGGTCAGATGGCCCGGTTATCATGTAATTAAAGATGCTTCCACCGCTAGTTTTTTCACTGTTCAGAGGTTCATTAATGGTGACACGTGGCTGCCTAGGACAGGTGTCAAGTTCACAGCAGGTCTCACCAATTGA 1620 0.5056 MAMLGFLFIVVLLPSFKALSYEPIHSEIQTQDMQALIAQACMDIENQNSCLTNIHNELTKIGPPSPTSVMSAALKATLNEALVAIDNMTKITTFSVSYREQQAIEDCKELLDFSVSELAWSLGEMRRIRGGDTNVQHEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHTLPFKPPRNKTIAESDGTSEFPEWMSEGDQELLRAKPHGVRADAVVALDGSGHYRSIAEAVNAAPSHSARRYIIYVKKGLYKENVDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYILATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWFGNFALNTLWYGEYRNYGPGASLSGRVRWPGYHVIKDASTASFFTVQRFINGDTWLPRTGVKFTAGLTN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01452 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 192 IPR035513 -
Viun6g01452 539 PANTHER PECTINESTERASE 11 527 - -
Viun6g01452 539 Gene3D - 230 537 IPR012334 -
Viun6g01452 539 CDD PMEI-like_4 64 191 - -
Viun6g01452 539 NCBIfam pectinesterase inhibitor domain 6 192 IPR006501 GO:0004857
Viun6g01452 539 Pfam Plant invertase/pectin methylesterase inhibitor 36 187 IPR006501 GO:0004857
Viun6g01452 539 SUPERFAMILY Pectin lyase-like 232 536 IPR011050 -
Viun6g01452 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 191 IPR035513 -
Viun6g01452 539 ProSitePatterns Pectinesterase signature 2. 379 388 IPR033131 -
Viun6g01452 539 FunFam Pectinesterase 229 537 - -
Viun6g01452 539 SMART PMEI_2 32 187 IPR006501 GO:0004857
Viun6g01452 539 FunFam Pectinesterase 34 193 - -
Viun6g01452 539 Pfam Pectinesterase 235 523 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01452 Viun-Chr6 22873544 22875857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01452 8 539 Carbohydrate Esterase AT3G05620 64.338 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01452 K01051 - gmx:100810565 1002.66