Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01448 ATGGCCGAGTGGGAGAAGTTGAGCGTTCTTGGAGAAGGTTCATATGGCACGGTTTATCTTGTTAGTGTGCGTCTTCTAGAAGAACACAATTCAAAGTTCTTACTTTTAGCTTTGAAGACAAGCTCTTCTTATTCAATGCTAAGGGAGAAAAAAGTTTTGGAGTTATTATTGGGTTGTGAAGAAATTGTTCAATGTTATTTTTACAAATACATTGTTGAGAGAGGTTGTTTAACTTACAACCTTTTCATGGAGTACGCCCCTCATGGTTCTCTAGGTGATTTAACAAAGACAGAGTTATTATCCGACAAGGAAGTGATAGTCTACACTCACATGATTCTCAAGGGACTTTCTTGCATGCACGAAAAGGGAATTGTTCATTGTGATCTTAAACCAGATAACATTCTCCTTTTTCCTTCATCGGATGGTCGTGCAAAGTATAAACTAAAGATTGCTGATTTTGGATTGTCTAAGACTAGAGAAGAGACAAATACTGATTTAGGAGAGATCAAGTTCAGAGGGACACCCTACTATATGTCGCCAGAATTAGTTAGAGGTTTTAAGGAAACACCTTTAGATATATGGTCCCTCGGGTGCATTGTTATTGAGATGAGCACTGGACTTAGAGAATGGTGGAACTTCCAAACCAAAGACCAATTATTGTGGAAGCTTGCATTTTTCGAAGAAGCACCGAAAATACCAGATAAACTTAGTTGCGATTGCAAAGATTTTTTGGAAAAGTGTTTGATGAAAAATCCTGAACAAAGATGTGTTAGGAATCCAAGCTCAGATCTCATTGGTGTTGTTCTCCCCAGTGAAACCCTCTCTGTAAAACCTAACAAGATGGACAGCTAA 852 0.3826 MAEWEKLSVLGEGSYGTVYLVSVRLLEEHNSKFLLLALKTSSSYSMLREKKVLELLLGCEEIVQCYFYKYIVERGCLTYNLFMEYAPHGSLGDLTKTELLSDKEVIVYTHMILKGLSCMHEKGIVHCDLKPDNILLFPSSDGRAKYKLKIADFGLSKTREETNTDLGEIKFRGTPYYMSPELVRGFKETPLDIWSLGCIVIEMSTGLREWWNFQTKDQLLWKLAFFEEAPKIPDKLSCDCKDFLEKCLMKNPEQRCVRNPSSDLIGVVLPSETLSVKPNKMDS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01448 283 Gene3D Transferase(Phosphotransferase) domain 1 1 263 - -
Viun6g01448 283 SUPERFAMILY Protein kinase-like (PK-like) 3 256 IPR011009 -
Viun6g01448 283 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 256 - -
Viun6g01448 283 ProSiteProfiles Protein kinase domain profile. 4 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01448 283 ProSitePatterns Protein kinases ATP-binding region signature. 10 39 IPR017441 GO:0005524
Viun6g01448 283 SMART serkin_6 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01448 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Viun6g01448 283 Pfam Protein kinase domain 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01448 Viun-Chr6 22854635 22856420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01448 3 255 MAP Kinase Kinase Kinase AT4G36950 40.449 1.58e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun6g01448 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01448 - - vum:124830341 343.969