Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01447 ATGCCGCCACGTCAAACGCCCTTCTTCATCGTGTTTCTATGTTTTTTCAATGCCTGTTCTTCTGTCTCCGCCACCCAATTTGACTTTGGAACCTTAACCATGAGCACATTGAAGCTTCTCGGTGATGCCCATTTGAACAACAACACCGTCAGTCTCACCGGCGACCCCGCCGTCCCGAACTCCGCTGCTGGTAGAGCGCTTTACTCCGACCCCGTCAGATTCCGGCAACCGGGGTCCCCTTCTCCGGCGAGCTTTGCCACCTTCTTCTCGTTCTCCGTCACCAACCTCAATCCATCCTCCGTCGGCGGTGGCCTCGCGTTCGTAATCTCGCCGGACTCCACCGCTGTCGGCGATTCCGGTGGCTTCCTCGGTCTGCAAAACCCCGCCGCCGCCACAGGCGGGGGCGGCGGGTTCGTCGCTGTTGAATTCGACACCCTGATGGACGTGGAATTCAGCGACATTAATGGAAACCATGTGGGGTTGGACTTAAACAGCGTTGTTTCGGCTCAAGTTAGCGATTTGGGAGGCGTTGGAGTGGATCTTAAAAGCGGTGACTCGGTGAACGCGTGGATCGAGTACGATGGAAACAGCAAAGGGTTGCGCGTGTGGGTCTCGTACTCGACTGTGAGGCCGAAAGATCCGATTTTGAAGGTGGATCTCGATGTCGGTATGTATGTTAATGATTTCATGTATGTGGGGTTTTCTGGGTCTACCCAAGGTAGCACGGAGGTGCACAGCGTCCAGTGGTGGAGTTTCAATTCCTCCTTCGATTCCGCGGCCGCTCCTGCCACCACGTCAGCACCCTCCGGCACTTCAGCACCTGAGCAGAAGGAGAGTAAGTCTTCTAGGAAGGGTACTGTGGGGGCTGTTGCTGGGGTGGTGACTGCTGGGGCTTTTGTTCTTGCTCTCTTTGCTGGTGCATTTATTTGGGTGTATTCTAAGAAGGTGAAGCGAATGAAGAAATTTGATCACTCTATTGAGTCGGAGATTATCAGAATGCCTAAGGAGTTCAGCTACAAGGAGCTGAAATTTGCCACTAAGGGGTTCAGTGCTAACAGGGTCATTGGACATGGCGCTTTTGGGACTGTGTACAAGGGTGTGCTGCCTGAGAGTGGTGACACTGTTGCGGTGAAGAGGTGTAACCATAGTGGTCAAGGTAAGAGTGAGTTTCTGTCTGAGTTGTCAATAATTGGGAGTCTGAGGCATCGGAATCTGGTTCACCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGACTTGATGCCCAATGGGAGTTTAGATAAGGCTTTGTATGAGGCTAGGATGCCTTTGTCATGGCCTCACAGGCTAAAAATTTTGCTAGGTGTGTCATCTGTGTTGGCCTACTTGCATCACGAATGTGAAAACCAGGTAATTCATAGGGACATTAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCTCGGTTAGGCGATTTTGGTTTAGCAAGACAAACACAACATGATAAGTCTCCTGATGCCACTGTGGCTGCCGGAACAATGGGGTACCTTGCCCCAGAGTATGTGCTAACTGGTAGAGCAACTGAGAAAACTGATGTGTTTAGCTATGGTGCGGTGGTTCTTGAGGTGGCCTGTGGGAGGAGGCCTATTGAGAAAGATGCAGCTGCAAATGGTAAAGTTGGGGTTAGCAGCAATTTGGTGGAATGGGTTTGGAGTTTGCATCAAGAAGGTAAGTTGCTAACCGCAGCTGATACAAGGCTTCAAGGTGAGTTTGAAGAAGGGGAAATGAGGAGAGTGCTCTTAGTTGGGTTAGCTTGTTCACACCCAGATTCAATGGCAAGACCAACTATGAGGGGTGCGGTTCAGATGCTGCTCGGTGAGGCTGAAGTGCCTATTGTCCCTAGAGCCAAACCTTCTACTAGTTACAGTACTTCTCACCTCTTGTTGAGCCTGCAAGATAGTGAATCTGACTGTAATAATGCTATGATCACCATCTCTACCTCCTCCTCAGAGAACAGCCTCAGTGGCAGACATATACTCTGA 2037 0.5042 MPPRQTPFFIVFLCFFNACSSVSATQFDFGTLTMSTLKLLGDAHLNNNTVSLTGDPAVPNSAAGRALYSDPVRFRQPGSPSPASFATFFSFSVTNLNPSSVGGGLAFVISPDSTAVGDSGGFLGLQNPAAATGGGGGFVAVEFDTLMDVEFSDINGNHVGLDLNSVVSAQVSDLGGVGVDLKSGDSVNAWIEYDGNSKGLRVWVSYSTVRPKDPILKVDLDVGMYVNDFMYVGFSGSTQGSTEVHSVQWWSFNSSFDSAAAPATTSAPSGTSAPEQKESKSSRKGTVGAVAGVVTAGAFVLALFAGAFIWVYSKKVKRMKKFDHSIESEIIRMPKEFSYKELKFATKGFSANRVIGHGAFGTVYKGVLPESGDTVAVKRCNHSGQGKSEFLSELSIIGSLRHRNLVHLQGWCHEKGEILLVYDLMPNGSLDKALYEARMPLSWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTQHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVACGRRPIEKDAAANGKVGVSSNLVEWVWSLHQEGKLLTAADTRLQGEFEEGEMRRVLLVGLACSHPDSMARPTMRGAVQMLLGEAEVPIVPRAKPSTSYSTSHLLLSLQDSESDCNNAMITISTSSSENSLSGRHIL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01447 678 CDD lectin_legume_LecRK_Arcelin_ConA 25 256 IPR001220 GO:0030246
Viun6g01447 678 Pfam Protein kinase domain 351 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01447 678 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Viun6g01447 678 FunFam L-type lectin-domain containing receptor kinase VIII.1 312 424 - -
Viun6g01447 678 FunFam L-type lectin-domain containing receptor kinase VIII.1 425 640 - -
Viun6g01447 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Viun6g01447 678 CDD STKc_IRAK 355 622 - -
Viun6g01447 678 ProSitePatterns Legume lectins beta-chain signature. 139 145 IPR019825 -
Viun6g01447 678 SMART serkin_6 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01447 678 FunFam L-type lectin-domain containing receptor kinase VIII.1 23 266 - -
Viun6g01447 678 Gene3D Phosphorylase Kinase; domain 1 310 424 - -
Viun6g01447 678 SUPERFAMILY Protein kinase-like (PK-like) 331 658 IPR011009 -
Viun6g01447 678 Pfam Legume lectin domain 25 264 IPR001220 GO:0030246
Viun6g01447 678 Gene3D - 22 270 - -
Viun6g01447 678 ProSiteProfiles Protein kinase domain profile. 349 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01447 678 PANTHER - 47 632 - -
Viun6g01447 678 MobiDBLite consensus disorder prediction 261 276 - -
Viun6g01447 678 MobiDBLite consensus disorder prediction 261 284 - -
Viun6g01447 678 Gene3D Transferase(Phosphotransferase) domain 1 425 628 - -
Viun6g01447 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 257 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01447 Viun-Chr6 22844920 22848478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01447 8 662 Receptor kinase-like Gene Family AT3G53380 64.306 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun6g01447 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01447 - - var:108341139 1244.18