Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01446 ATGGTTCTCTCCAAAACCGCATCCGAATCCGACGTTTCCGTCCACTCCACCTTCGCTTCTCGCTATGTCAGAACTTCACTTCCCAGGTTCAGGATGCCGGAGGAGTCGATTCCAAAGGAAGCAGCGTACCAGATCATAAACGATGAGTTGATGTTGGATGGGAACCCGAGGTTGAACTTGGCTTCATTTGTGACGACATGGATGGAACCTGAGTGTGATAAACTCATCATGGCTTCCATCAATAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTTCAGAATCGATGTGTGAACATGATAGCTCATCTTTTTAATGCACCACTACAAGAATCTGAAGCTGCTGTTGGTGTTGGCACGGTCGGTTCATCAGAAGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAAGTGGCAAAACAGAAGGAAAGCAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACCGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTCGAGGTGGAGTTGAAGGAAGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGACCAGGCTGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAGGATGTCAAACGCCTCAATGATCTTCTTATCGAAAAGAATAAGCAAACTGGGTGGGACACTCCTATTCATGTTGATGCAGCCAGTGGTGGATTCATTGCCCCATTTATTTACCCAGAGCTTGAGTGGGATTTCCGATTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAGTATGGTTTGGTGTATGCTGGAATCGGTTGGGTTATCTGGAGGACCAAGGAGGACCTGCCTGAAGAACTCATCTTCCATATCAACTATCTCGGAGCTGATCAACCCACCTTCACACTTAACTTCTCCAAAGGTTCCAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTCGGTTATGAGGGCTACAGAAACGTGATGGAAAATTGCAGAGACAACATGTTGGTGCTGAAAGAGGGACTCGAGAAGACAGGTCGGTTTTCCATTGTGTCCAAAGACAATGGTGTGCCTTTGGTTGCTTTCACCCTGAAAGACCACACCCACTTTGACGAGTTCCAAATCTCTGACCTGCTGAGACGTTTTGGATGGATTGTGCCAGCATACACCATGCCCCCAGATGCTCAACACGTTACGGTGCTTCGTGTTGTCATCAGAGAAGACTTCTCAAGAACCCTTGCAGAGCGTCTCGTGGCAGATGTGGAAAAGGTGTTGCATGAGCTTGATGGCCTTCCAGCAAGGGTTATAAGTAGCACCACTGTGGCAGTCAACACAGAAGAAAATGGCAAAGTGGTTAAGAAGAGTGCTCTGGAGACACAGAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTCAATGACAAGATGAATGGTGTTTGCTAG 1506 0.4681 MVLSKTASESDVSVHSTFASRYVRTSLPRFRMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLQESEAAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPDQAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKQTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMLVLKEGLEKTGRFSIVSKDNGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDGLPARVISSTTVAVNTEENGKVVKKSALETQREITAVWKKFVLERKKLNDKMNGVC 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01446 501 FunFam Glutamate decarboxylase 1 65 - -
Viun6g01446 501 Gene3D - 361 448 - -
Viun6g01446 501 PANTHER GLUTAMATE DECARBOXYLASE 1 491 IPR010107 GO:0004351|GO:0006536|GO:0030170
Viun6g01446 501 Gene3D - 66 360 IPR015421 GO:0003824
Viun6g01446 501 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Viun6g01446 501 CDD DOPA_deC_like 59 439 - -
Viun6g01446 501 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Viun6g01446 501 Gene3D - 1 65 - -
Viun6g01446 501 FunFam Glutamate decarboxylase 361 448 - -
Viun6g01446 501 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Viun6g01446 501 FunFam Glutamate decarboxylase 66 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01446 Viun-Chr6 22838076 22844578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01446 1 501 Calmodulin-binding Proteins AT5G17330 83.992 0.0 891