Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01440 ATGAATATGGCTCCTGTTTCACTGCCTCCTGGGTTTAGGTTCCACCCCACAGATGAAGAACTTGTTTCTTATTACCTCAAAAGAAAGATAAATGGTCGTAAGATCGAGCTAGAGATCATCCCTGAAGTTGATCTTTACAAGTGTGAACCATGGGACTTGCCGGGGAAGTCATTGTTACCGGGGAAAGATTTGGAGTGGTATTTCTTCAGTCCTCGAGATAGAAAATATCCAAATGGATCAAGAACAAATCGTGCAACAAAATCTGGATATTGGAAAGCCACGGGAAAAGACCGTAAGGTGAATTCTCAGAGTTGCGCAATAGGAATGAAGAAAACCCTAGTTTACTATCGAGGTAGGGCACCACATGGTTGTCGCACAGGTTGGGTTATGCACGAGTACCGTCTTGATGAGACACAGTGTGAAACCAACACAGGCTTGCAGGATGCATATGCTCTTTGTCGTGTGTTCAAGAAAACTGCAGTGATTCCTCCAAAAGTTGGAGATCAACACTATGTTAATGTGACAAATCAGATCATTGCTAGTGATCAATCATCAAGCATTAACGAGCTATACTCTGAAGGAAGAGGTGAAGTTTTAGAGAGCTCGAATTATTTCATGTCATTGGATACATGCCCTTCCTCGAACATAAATGTGAACACCTTCAACAATATCAATGGTGGAAGAAGGGACAACGAGACAACATGGTCGCATTTCTTATCAGAAGACTTGCTCAATCTTCCAACAACATCCACTTCTTCATTTCCCAATTATGGATCCATGAGCTATCCTCCATCAAAGGTGGATGTAGCATTAGAGTGTGCAAGGATGCAGCATAGGTTTAGCATGCCTCCATTGCAGATGCAGGACTTGGAGTTTCCTCAAGTTGGAATCTCCAAGCTGAAGATGGCACAAGCCTCGAGTTCCATGAGTGGAACCAGAAATGAAACAGATATCTTGCAGGAAATTCTTTCGGTTGCTCATGCTTCTCAGGAGTTAATAAATCAATCCAACTACTCATCACAACCATTCATGAATGCCAATGAAAACTTTGCTCCTCACGAAAGTGACTTCACTTTTATGGTTGGCACCAATTACAACCATGTCAACGATATGAACACCATGGGATTTGTTGACAAAGCTTGGGAAGACCAAAACACAAGATCAATAGAGATCGGAGATCTTGATGATGGATTCAAGACAGAGAATTTAAGATGGATGGGAATGTCCAGCAAAAATGTCGGAAAGAGCTTTATTGAAGAGCAGCAAAATATTGTTCCAATTGATGATATCTCAAACTTCCAAACTAATACGGAAGGAAACGAGATGAAAGGATTTGAGAAACACAGTTGCAACAAAGAAATAACCGATACTGAGATTGATGATTTTTCAATGGGATTCATGAATGATGAAGACCCGAATGAGAATCTCCTGAATGAGGAAAACATTGACTATTCAAATTCTACAAACTTCGATGTTGTCGAGGAAACAAAAACGAATCATGGAATGTTTGTCTCCACGCATCAAGTAGCTGATACATTCTTTCATCAAGTAGCTCCTTCACAAACCCTAAAAGTTCAACTCAATCCAGTAATGGCTGGGAATCAGTCTATAGAGAATGCAACAGTTAGCCATGGAGCCTCTTTCTTTAGAAAGTTTAAGGCCTATGCGACAGGGAAGCTAAGAAAGCCATCAAACACAATAGCAAGTGCTGTTGAATTCATCTTTGCATTGTTGTTGATGCATTGTGTTTTGCTAAAGGAATTTGTGGAAGATTGGAAATCAGATCTTAAACATGGTGGCAGTGTTTACACGATGAAGAGAATGAGAGAAGCATCAGAGACTGTGACAAGGAATGAAGAAGAAAAAGTTTGGTTGGTTGGTATGAAATATGGGAAGGGATTTAGCATGATCCTAAAGAAGATAAGCATTTTCCTCACTATATCATTGGCTCTGTTTACCATGTGGGCTAATCATATCATAGTTGACTCTTAG 1992 0.4036 MNMAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSCAIGMKKTLVYYRGRAPHGCRTGWVMHEYRLDETQCETNTGLQDAYALCRVFKKTAVIPPKVGDQHYVNVTNQIIASDQSSSINELYSEGRGEVLESSNYFMSLDTCPSSNINVNTFNNINGGRRDNETTWSHFLSEDLLNLPTTSTSSFPNYGSMSYPPSKVDVALECARMQHRFSMPPLQMQDLEFPQVGISKLKMAQASSSMSGTRNETDILQEILSVAHASQELINQSNYSSQPFMNANENFAPHESDFTFMVGTNYNHVNDMNTMGFVDKAWEDQNTRSIEIGDLDDGFKTENLRWMGMSSKNVGKSFIEEQQNIVPIDDISNFQTNTEGNEMKGFEKHSCNKEITDTEIDDFSMGFMNDEDPNENLLNEENIDYSNSTNFDVVEETKTNHGMFVSTHQVADTFFHQVAPSQTLKVQLNPVMAGNQSIENATVSHGASFFRKFKAYATGKLRKPSNTIASAVEFIFALLLMHCVLLKEFVEDWKSDLKHGGSVYTMKRMREASETVTRNEEEKVWLVGMKYGKGFSMILKKISIFLTISLALFTMWANHIIVDS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01440 663 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Viun6g01440 663 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Viun6g01440 663 FunFam Nac domain-containing protein 86 17 161 - -
Viun6g01440 663 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Viun6g01440 663 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 303 - -
Viun6g01440 663 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01440 Viun-Chr6 22802804 22806589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01440 3 654 NAC Transcription Factor Family AT1G65910 43.109 1.40e-160 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun6g01440 NAM 2.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01440 - - gmx:100818019 1004.97