Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01435 ATGACGATGGAAGATGAGTCCTTGGCAACAGTCCCATTTGACAGGGCTATTGAACAGGCAATTGTGTCTATCAAGAAAGGTGCATATTTACTTAAGTGTGGTCGTAGGGGAAAGCCGAAGCTCTGTCCTTTCAGACTTTCCCAGGATGAGAGAAATTTGATTTGGTATTCAGGACAGCAGGAAAAGCATTTGCGATTGAGTGTAGTTACAAAAATTGTTCAAGGGCAAGAAAATATAAGGTCCCAGAGGCAAAATGAACCCGAAAAGGAGTGCCATTCGTTTTCTCTAATCTATGCTAATGGTGAACGTTCTCTTGATCTGATATGCAAGGACAAGGCACAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTCATCTCTAGGTGTCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGCAAAGGTGTGCAGAGTTGTGTTAGTAGTCCTGCTGGAATCTTACGAAGAAAGAAAAATCTTGGCCTTTTGGATGATACCTCTCAGTTTACTCAGGTACATAGCGTATGTGCAAGTCCTACTTTATCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGCACTTCTGATAACTTATATTCATCCACATCTTTCCTCTCCAGCACTCAAGGTGTAACAGATAATTCAGTGCCAAGTTCTCCATACATTGATCCAGATGTTCATAGTAACATTGAATCAACTCGCATTGATAAGGAGCACAAGAAGAATTTGTCCTATAGGCATTTGACGCATTCTACCTCCGTACATTTAGGAAAAAGTAATGTATTGAAGGATGTAATGATATGGGGTGGAGGGATTGGGTGTCTTGTAGGGATTGTGAATGAAAGGTTTATTCAAGGTGGGGTCTATTCTTTAGTGCCGAAGTTACTAGAATCCACTGCAATGTTAGATGTACAGAACATAGCTTTGGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTTTTTTGTTGGGGTCAAGGAAAGTGGGGAAGACTCGGGCAGAAAATTGATATGGACATTAGCTCCCCAAAAATAGTGGATTCTCTTAATGGTCTTCATGTAAAGCACGTTGCTTGTGGTGAGTATCATACGTGTGCTCTGACAGATTCTGGTGAAGTATATACTTGGGGAAATGATGTCTGCTGTGCAGATTTATTTAATGAAGGGAGAACTAGAAGTCAGTGGATACCACAAAAACTTGGCGGATCCTTAGATGGTATTAGTATCTCTAGTATTGCTTGTGGAGAATGGCATACTGCGATTGTTTCTAGTTGTGGGAGGTTATTTACTTACGGAGATGGTACATTTGGGGTTCTTGGCCATGGTGATCTTCGGAGCTATTCAAGTCCAAAAGAAGTTGAGTCTCTTAGTGGACTAAGGGTGAGGTCTGTTGCATGTGGATCATGGCATACATCTGCTATTGTTGAAGTTATGTTTGATCGTTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGACGAGGGGAGGCTTGGTCATTCGGATAACGGAAGCAAGCTTGTACCAACATGTGTTACACAACTTGTGGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGCAAGGTTTTTGCTATGGGAAGTGCCAAATATGGACAGTTAGGAAATCCACATGCCAAGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTTATATCAACCGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTTTATACATGGGGCAGGGGTGAAAATGGACAACTGGGGCTAGGTGATACTGAAGATAGATATACACCTTGTTTTGTTGAGGCTCTAAGAGATAGACAGGTAAATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGATTCACAAGGAAGAAGCATAACTGCTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAGAAGATTATAAATGCACCTCTAGCCCCCAGTAAGAGCAAGGCTTTTCGGGTTTGTGATCAGTGTTTTGATAAACGACAGGGAGGTACACATTCAATAATGGCTTCTAAGTCCAGAAATTACAACAGTCAACAGTTGTTGAAGCATCAACAAAAAATTGCTGATGTGACTGAAGACCGGGGAGAGACAACCGTGACACAAGGCCCTCTGCTATCTTTTGGTCAATCATGTTACAGGAAAAGTATGCCAAGTGGACGTAAGGATTGGAAAAACCACCCAGAAAGCCAACAGGATGTAGAAGATAGTTCTTCTATGCTAGGTGGAATGCCGCAGTGGGGGCAAGTTCCATGTCCTGCCATATTTAAAATTAATGAGACAGGTACAACTAAATCTGAGAAGGTTCTGCTTGAAGAAGTTCATAGGCTGAGAACCGAGGCTAAGAGACTTGAAGAGCAATGTGAGCTTAAAAATCATAAAATACAAGAGTGTCAGCAAAAAATTGAGGAGAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACCATATCAGGAAAAGATAATGCTGGGCAAGAAGCAAAAGTTGGACAACATGAATTTGTGCCTAATCTGGCAACCATAGTTACAGATATGAAGAGTCCAAGAGATGGCAATGGGGACAGTCTATCCAATTCTCCCATAGTATTCTCTGACATAATAAAATCCAAATTTGGGAGAAGCATGTTTCCCAAAAATGAAAATTCTAACTTTAGTAGAGGTGAGTCTCAACAGGACAATATCAATGGATTGAAGGCAGACTGGGTAGAACAATATGAGCCAGGTGTTTACATCACATTTACAACCTTACCATGTGGGAAAAAAGGCCTTAAGCGAGTCAGATTTAGTCGCAAGCGATTCTCAGAGAAGGAAGCCGAGAAATGGTGGGAAGAGAATCAGAGCAAGGTGTATCACAAATATGGGATTGAAGGATATATAAACACCAGCCAAAGTCAGGTGAAAGGCTAA 3111 0.414 MTMEDESLATVPFDRAIEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSVVTKIVQGQENIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSCTSDNLYSSTSFLSSTQGVTDNSVPSSPYIDPDVHSNIESTRIDKEHKKNLSYRHLTHSTSVHLGKSNVLKDVMIWGGGIGCLVGIVNERFIQGGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKHVACGEYHTCALTDSGEVYTWGNDVCCADLFNEGRTRSQWIPQKLGGSLDGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLRVRSVACGSWHTSAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHSDNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHAKDKAVMVEGQLKQEFVKVISTGSYHVAVLTSAGSVYTWGRGENGQLGLGDTEDRYTPCFVEALRDRQVNTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGTHSIMASKSRNYNSQQLLKHQQKIADVTEDRGETTVTQGPLLSFGQSCYRKSMPSGRKDWKNHPESQQDVEDSSSMLGGMPQWGQVPCPAIFKINETGTTKSEKVLLEEVHRLRTEAKRLEEQCELKNHKIQECQQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDNAGQEAKVGQHEFVPNLATIVTDMKSPRDGNGDSLSNSPIVFSDIIKSKFGRSMFPKNENSNFSRGESQQDNINGLKADWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQSKVYHKYGIEGYINTSQSQVKG 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01435 1036 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Viun6g01435 1036 SMART fyve_4 646 715 IPR000306 GO:0046872
Viun6g01435 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Viun6g01435 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Viun6g01435 1036 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Viun6g01435 1036 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Viun6g01435 1036 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Viun6g01435 1036 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Viun6g01435 1036 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Viun6g01435 1036 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Viun6g01435 1036 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Viun6g01435 1036 MobiDBLite consensus disorder prediction 770 784 - -
Viun6g01435 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 724 IPR013083 -
Viun6g01435 1036 Gene3D - 486 648 IPR009091 -
Viun6g01435 1036 Gene3D - 226 387 IPR009091 -
Viun6g01435 1036 Gene3D - 389 482 IPR009091 -
Viun6g01435 1036 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 881 - -
Viun6g01435 1036 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Viun6g01435 1036 Pfam Transcription factor regulating root and shoot growth via Pin3 967 1021 IPR013591 -
Viun6g01435 1036 SUPERFAMILY FYVE/PHD zinc finger 653 726 IPR011011 -
Viun6g01435 1036 Gene3D - 16 133 IPR011993 -
Viun6g01435 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Viun6g01435 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Viun6g01435 1036 CDD PH_PLC_plant-like 15 127 - -
Viun6g01435 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Viun6g01435 1036 Coils Coil 819 853 - -
Viun6g01435 1036 MobiDBLite consensus disorder prediction 770 791 - -
Viun6g01435 1036 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Viun6g01435 1036 SUPERFAMILY PH domain-like 16 126 - -
Viun6g01435 1036 ProSiteProfiles BRX domain profile. 967 1022 IPR013591 -
Viun6g01435 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Viun6g01435 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Viun6g01435 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Viun6g01435 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Viun6g01435 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 374 425 IPR000408 -
Viun6g01435 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Viun6g01435 1036 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01435 Viun-Chr6 22786859 22796901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01435 968 1026 Major Intrinsic Protein MIP AT1G31880 45.763 1.41e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01435 - - gmx:100797223 1926.37