Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01431 ATGATTTGCATCACTTTGCTATCGCTTGTAGCAGCAGCAGCAGCAACAACAACAACATCAACAACGAAAAGTAAATCAATGTCAAAACTAACCGCTCTCTTGTTTCTTCTATTTGCATTCTTCAATTCTTCAACAGTCACGGGTTTATACTCTCCTTCACCTCCCGCCGCGCCATTTTCCCAATCTACCCCTGACCCCGACTCCTCTCCACCGACCGAGTGGCTCTTCGCCCATGCCACGCACTACGCCGCCACCGACGCGCTTGGCGGCGCGTGCGGCTACGGTGACCTTCCCAACGGCATGGCCACCGCTGCACTCAGCGAAGCCCTCTTCAACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCGCGAGGAGGACGCCGACTTCGACCGCCGCTGGTGCATCTCCGGCGCGTCGGTTGCCGTCACCGCCACCAATTTCTGCGCACCGAACTACGGATCCGACGCCGACAGCCTCAGCGGACACTGTAACCCTCCGAAGCAGCATTTCGTTCTCCCCATCGAAGTTTTCGAGAAAATCGCAATCTGGAAAACTGGCACCGGCAACATGCCAGTGCAGTATCGCAGGATAGAGTGCAGAAGAGAAGGGGGAATGCGGTTCACAATAAGTGGTTCTGGAATCTTCATTTCGGCACTGATTAGTAATGTGGGTGGGATGGGAGACATTGTGGGTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTTCAATGGGTAGGAACTGGGGTCAGAACTGGCATGTTAATGCTTTACTGCAGAATCAACCTCTTTCTTTTGAGGTCACTGGTAGTGATGGAATCACTGTTACATCTTACAATGTTGCTCCCAAGGATTGGACTTTTGGACAATCTTTTGAAGGAAAACAATTTGTCCTTCACAGATAA 912 0.5241 MICITLLSLVAAAAATTTTSTTKSKSMSKLTALLFLLFAFFNSSTVTGLYSPSPPAAPFSQSTPDPDSSPPTEWLFAHATHYAATDALGGACGYGDLPNGMATAALSEALFNRGQICGACFELRCREEDADFDRRWCISGASVAVTATNFCAPNYGSDADSLSGHCNPPKQHFVLPIEVFEKIAIWKTGTGNMPVQYRRIECRREGGMRFTISGSGIFISALISNVGGMGDIVGVKVKGSKTGWLSMGRNWGQNWHVNALLQNQPLSFEVTGSDGITVTSYNVAPKDWTFGQSFEGKQFVLHR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01431 303 SUPERFAMILY Barwin-like endoglucanases 73 225 IPR036908 -
Viun6g01431 303 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 217 296 IPR007117 -
Viun6g01431 303 Pfam Expansin C-terminal domain 208 285 IPR007117 -
Viun6g01431 303 Gene3D - 59 203 IPR036908 -
Viun6g01431 303 SUPERFAMILY PHL pollen allergen 204 296 IPR036749 -
Viun6g01431 303 SMART dpbb_1 103 197 IPR007112 -
Viun6g01431 303 PRINTS Expansin signature 282 298 IPR002963 GO:0009664
Viun6g01431 303 PRINTS Expansin signature 253 274 IPR002963 GO:0009664
Viun6g01431 303 PRINTS Expansin signature 206 218 IPR002963 GO:0009664
Viun6g01431 303 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Viun6g01431 303 PRINTS Expansin signature 163 180 IPR002963 GO:0009664
Viun6g01431 303 PRINTS Expansin signature 98 112 IPR002963 GO:0009664
Viun6g01431 303 PRINTS Expansin/Lol pI family signature 190 206 IPR007118 GO:0005576
Viun6g01431 303 PRINTS Expansin/Lol pI family signature 73 88 IPR007118 GO:0005576
Viun6g01431 303 PRINTS Expansin/Lol pI family signature 282 296 IPR007118 GO:0005576
Viun6g01431 303 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Viun6g01431 303 CDD DPBB_EXPA_N 73 202 - -
Viun6g01431 303 Gene3D - 208 299 IPR036749 -
Viun6g01431 303 PANTHER EXPANSIN-A15 33 299 IPR002963 GO:0009664
Viun6g01431 303 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 89 207 IPR007112 -
Viun6g01431 303 Pfam Lytic transglycolase 103 197 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01431 Viun-Chr6 22774357 22776084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01431 73 299 Expansin Gene Family AT3G03220 70.815 1.68e-116 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01431 - - gmx:100790211 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01431 6 22774357 22776084 Viun6g01431 6 22774357 22776084 ECH
Viun6g01431 6 22774357 22776084 Viun8g02088 8 31285578 31287827 PCT