Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01430 ATGGCGATTCGAGATCAGAATGGATTTAACAGATCACAAGATGGTCCTTCAGCAGCAAGTGGTGTATCTTTGAGTTCTGGAGTGCATTCTGTTTCACATATTCAACTTAATGACCAGTTTTCTTGTGGGAGTGATTATGCTCTGAAGGTAAGGAAACCGTATACTATAACAAAACAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAATTCCTTGAAGCTTTAAAGCTTCATGGACGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCCAAGGTTCTTCGCGACCCTACTGGGAGTGTTACTAATACAGCGGAATCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAGCTAGTTGAGACTCCTACTAAAGAAACTTCAATCCCAGAACAACTTATGAAGTCTGGTTCTCTGAAGTCATCAGATTTTGATCAAGAAAACCAATCTCCGAAATCAGTATTATCAGGAGCTGGTTCAGACAGCCTTAGCTCCTCAGATTCAGACACACCAAACGAAAGTTTGTCCCCCATGTCATCATCCATCAGTGACATCCATACAAGTGGTTTTACATGCGCCGAACCCAACACAACATCCGAAGAACCTGGAATAAACGCTGATTCTTCTCATGATGAGAAATCTCTTATGAAATTCAAGCTTCCTACAAACGAAAGTGTTTTCATCAAAGAAGAATCTTCCGGCCAGACTTTGAAACTCTTTGGGATTACACTTTTTGTAACGGATACATGCAAACCCTCTTCTCCAACAACTGAAGCATGCAAACCAATACCTCTAAACATATGCAAGGGGGATGGAAGATTGGAACTTCTTGGCCACATCACACCAAGTGAAACATCAGCCATATCCCTACTAAAGGTGAGAGAGGGTCCTGAAACATGTGGGAAAGGGTTTGTGCCATATAGAAGGTGCATGGCAGAGAGAGAAAACCAGTTTTCATCTGTGACAATGACAAATGAGAATAAAGAAGAGCAATGCATCCACCTTTCCTTGTAG 1083 0.4201 MAIRDQNGFNRSQDGPSAASGVSLSSGVHSVSHIQLNDQFSCGSDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGSVTNTAESIEIPPPRPKRKPMHPYPRKLVETPTKETSIPEQLMKSGSLKSSDFDQENQSPKSVLSGAGSDSLSSSDSDTPNESLSPMSSSISDIHTSGFTCAEPNTTSEEPGINADSSHDEKSLMKFKLPTNESVFIKEESSGQTLKLFGITLFVTDTCKPSSPTTEACKPIPLNICKGDGRLELLGHITPSETSAISLLKVREGPETCGKGFVPYRRCMAERENQFSSVTMTNENKEEQCIHLSL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01430 360 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Viun6g01430 360 MobiDBLite consensus disorder prediction 148 227 - -
Viun6g01430 360 MobiDBLite consensus disorder prediction 115 235 - -
Viun6g01430 360 MobiDBLite consensus disorder prediction 126 143 - -
Viun6g01430 360 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Viun6g01430 360 SMART sant 59 107 IPR001005 -
Viun6g01430 360 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Viun6g01430 360 MobiDBLite consensus disorder prediction 1 24 - -
Viun6g01430 360 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Viun6g01430 360 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Viun6g01430 360 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Viun6g01430 360 PANTHER SWI/SNF COMPLEX-RELATED 43 243 - -
Viun6g01430 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Viun6g01430 360 CDD SANT 62 105 IPR001005 -
Viun6g01430 360 Gene3D - 62 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01430 Viun-Chr6 22770653 22774037 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g01430 Myb_DNA-binding 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01430 - - gmx:780539 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01430 6 22770653 22774037 Viun6g01430 6 22770653 22774037 ECH