Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun6g01429 | ATGGGTTCTTGGGCTAGAGTATCTGTTTTGACCTTTCCATGGTCTACAATCAATGCTGAATCTGCTATGGACTCCAAATTAAGCGGTGTTTTTTATAAAATGTACAGAAATACAAATAATAGAAAACTGTGTCTCTCTTTTTCTTGGGATAATTATAAACTTAGGAGTATTGGTGTGATTAAATCAAGCCAAGATGTATCTTATTTTCAAACCGAACAAGAAGTAGGGACTTGGGAAGAACCAGATACTGGCAGTGACAGTGAGTCTGACGATGAGGAAGTTGAAGACCACTTTCTATTTGAAAGTGACGGAATGAGGGCTTCAGTTGTTGCTGATGTTAATGTAACTTCAAGGGACAACTATGAAGAACTTATTAAGAAAGAAGTTGAACAACTTTTGGAACCAGAAGAAAGAGCAATATTGCAACAGAATGTTACTCCTAACTTGGAAAAAATATCAACTGAAAAATGGAGCCCACTACACACTCTTGTGCTATCAATGCAGATGAGTTGCGTGGATAAGCTTCTTGATAATGGCATGGACATTGATTTCCCTGATAAGGAAGGTCTTACTGCACTTCATAAGGCAATTATAGGTAAAAAAGATACTTTGATTAGCCATCTTTTACGGAGACGAGCAAGTCCGCATGTTAAGGATAAGGATGGAGCCACTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGATGACTGTGAAATTATTGATCAAATACAAGGCTGATGTCAATGTTGAAGATAACGATGGTTGGACCCCCTTGCACGTTGCCATTCAGAGCAGAAATAGAGATATAGCAAAAATTTTGTTAGTCAATGGTGCTGATAAGACAAGAAAAAATAAGGACGGAAAAACAGCTCTGGATCTAAGCTTATGTTATGGGAAAGATTTCAAGTCTTATGAACTTGCCAAATTACTGAAGACGGTTCCAGCAGATAGCTGTCTATGA | 963 | 0.3801 | MGSWARVSVLTFPWSTINAESAMDSKLSGVFYKMYRNTNNRKLCLSFSWDNYKLRSIGVIKSSQDVSYFQTEQEVGTWEEPDTGSDSESDDEEVEDHFLFESDGMRASVVADVNVTSRDNYEELIKKEVEQLLEPEERAILQQNVTPNLEKISTEKWSPLHTLVLSMQMSCVDKLLDNGMDIDFPDKEGLTALHKAIIGKKDTLISHLLRRRASPHVKDKDGATPLHYAVQVGAKMTVKLLIKYKADVNVEDNDGWTPLHVAIQSRNRDIAKILLVNGADKTRKNKDGKTALDLSLCYGKDFKSYELAKLLKTVPADSCL | 320 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun6g01429 | 320 | MobiDBLite | consensus disorder prediction | 79 | 94 | - | - | |
| Viun6g01429 | 320 | Gene3D | - | 116 | 222 | IPR036770 | - | |
| Viun6g01429 | 320 | Gene3D | - | 223 | 303 | IPR036770 | - | |
| Viun6g01429 | 320 | Pfam | Ankyrin repeats (many copies) | 157 | 198 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 127 | 312 | - | - | |
| Viun6g01429 | 320 | SMART | ANK_2a | 254 | 283 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | SMART | ANK_2a | 155 | 184 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | SMART | ANK_2a | 287 | 320 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | SMART | ANK_2a | 221 | 250 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | SMART | ANK_2a | 188 | 217 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | ProSiteProfiles | Ankyrin repeat profile. | 188 | 220 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | ProSiteProfiles | Ankyrin repeat profile. | 254 | 286 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | ProSiteProfiles | Ankyrin repeat profile. | 155 | 187 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | SUPERFAMILY | Ankyrin repeat | 147 | 311 | IPR036770 | - | |
| Viun6g01429 | 320 | ProSiteProfiles | Ankyrin repeat region circular profile. | 221 | 253 | - | - | |
| Viun6g01429 | 320 | ProSiteProfiles | Ankyrin repeat profile. | 221 | 253 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | Pfam | Ankyrin repeats (3 copies) | 208 | 285 | IPR002110 | GO:0005515 | |
| Viun6g01429 | 320 | MobiDBLite | consensus disorder prediction | 71 | 94 | - | - | |
| Viun6g01429 | 320 | ProSiteProfiles | Ankyrin repeat region circular profile. | 254 | 280 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun6g01429 | Viun-Chr6 | 22762477 | 22767014 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun6g01429 | 140 | 280 | Ion Channels | AT2G25600 | 30.496 | 1.56e-08 | 54.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun6g01429 | - | - | gsj:114380843 | 516.538 |