Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01399 ATGATGTTTGAACTAAAGCTAATTATTGTCTTAACGATGATGTTGTGGAGCAGTAATATTGGTGCAAAGGGTGATCCACAGACATATCTTGTAAACAGTGGGTGCAGTTCATACAACGCTAGCAACGTGCAGAATTTCTATGCGAATATCAACGCAACATTTTCAAACCTTAGAAGAGATATTAGCAATAACAGCAAGCAGTTTGGCACAACACAGCAAGCCATAGGAGAGGTTCTCACATATGCTATGTTTCAATGCAGAAACTATCTCTCCAAAAATGATTGTCTTTCTTGCTTCAACACCGCCTCAACCCAAATCCGCAACTGCTCCGCCGCCAACGGCGCCAGAGTCATCTACGACGGTTGCTTCCTCAGGTATGAGAGCGAGATGTTCTTCGACCAGACCAATGAACTTGGCAAGGGTGTAATATGTGGGAAGAACACTTCAAATGCCACTGGTCTTGGATTAGTTGGACAACAAGTTATCGCAGATATCCAAACAGCAACACCCAAAACCAAAGGGTTTTATGCAGCAACCAAGACACAGGTCGCTGATGGAACTGCAATTTATGCTGTTGCACAGTGTGTTGAAACTGCAACCGAGGATAAATGTCTGAGTTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCTTATGATGCTGGCTGTTTCATGAGATACTCCACCACACCTTTCTTTGCTGATAACCAAACCATTGATATTGCACCCTTTTTAAAACAAGGAGATTCAAGCAAGAAGTGGATTATAATTGGTGCCAGTGTTGGAGCTGTTGTTGCTCTCCTCTGTGTGTTGTTTGCATGTCGATGGTTTACAAAACCAAAGAGGGTTCCTAGAGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCTGCAACAAAAAAATTCAGTGCTGAAAACAAACTTGGGGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCCGTAAAAAAACTAGTGTTGGGAAAATCAAGCAAGATGGAGGATGATTTTGAGGGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGGAATCTTGTTAGACTTCTTGGTTGTTGCAGCAAAGGCCAAGAGAGAATCTTGGTTTATGAGTATATGGCAAATAGCAGTCTTGACAAATTCTTATTCGGTAACAGAAAAGGTTCCCTCAATTGGAAACAACGTTATGATATAATTTTAGGCACAGCAAGGGGACTAGCATATCTGCATGAGGAATTCCACGTGTCCATCATACATAGAGATATCAAGACTTCTAATATCCTCTTGGATGATGATCTTCAACCCAAAATTGCTGATTTTGGATTGGCAAGGCTTCTGCCAGAGGATCGTTCCCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCATTGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGAATTGTAGTCCTAGAAATCGTTAGTGGTCAAAAGAGTACCGAGGTGAAGGGTGACGATGATGGTCATGAATACCTACTTCAACGAACATGGAAACTGTATGAGAGAGGAATGCACCTAGAGCTGCTGGACAAGGCCATTGACCCTAATGATTATGATGCAGATGATGTTAAGAAAATCATAGAAATTGCATTGTTATGCACTCAGGCATCAGCTGCCACGAGACCAACAATGTCTGAAGTAGTAGTGCTACTCAAAAGCAAGAGCTTAGTGGAGAACCTGCGACCAACTATGCCTGTGTTTGTTGAAACGAATATGAAGATCCGGGAAAGCAAGTCTAGCTCAACCAGCGGCTCTTCATCTAATGCCACTGCCTCTATTTCTGTTCTATCAGCACGATGA 1923 0.4197 MMFELKLIIVLTMMLWSSNIGAKGDPQTYLVNSGCSSYNASNVQNFYANINATFSNLRRDISNNSKQFGTTQQAIGEVLTYAMFQCRNYLSKNDCLSCFNTASTQIRNCSAANGARVIYDGCFLRYESEMFFDQTNELGKGVICGKNTSNATGLGLVGQQVIADIQTATPKTKGFYAATKTQVADGTAIYAVAQCVETATEDKCLSCMQVGYNNLQSCLPNTEGRAYDAGCFMRYSTTPFFADNQTIDIAPFLKQGDSSKKWIIIGASVGAVVALLCVLFACRWFTKPKRVPRGDILGATELKGPVNYKYNDLKAATKKFSAENKLGEGGFGDVYKGTLKNGKVVAVKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGNRKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTSNILLDDDLQPKIADFGLARLLPEDRSHLSTRFAGTLGYTAPEYAIIGQLSEKADTYSYGIVVLEIVSGQKSTEVKGDDDGHEYLLQRTWKLYERGMHLELLDKAIDPNDYDADDVKKIIEIALLCTQASAATRPTMSEVVVLLKSKSLVENLRPTMPVFVETNMKIRESKSSSTSGSSSNATASISVLSAR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01399 640 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 81 628 - -
Viun6g01399 640 MobiDBLite consensus disorder prediction 618 640 - -
Viun6g01399 640 CDD STKc_IRAK 326 593 - -
Viun6g01399 640 Gene3D - 142 240 IPR038408 -
Viun6g01399 640 Gene3D - 27 131 IPR038408 -
Viun6g01399 640 Pfam Protein kinase domain 321 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01399 640 ProSitePatterns Protein kinases ATP-binding region signature. 326 349 IPR017441 GO:0005524
Viun6g01399 640 FunFam Cysteine-rich receptor-like protein kinase 2 139 240 - -
Viun6g01399 640 Gene3D Transferase(Phosphotransferase) domain 1 397 626 - -
Viun6g01399 640 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Viun6g01399 640 FunFam Cysteine-rich receptor-like protein kinase 2 287 396 - -
Viun6g01399 640 Gene3D Phosphorylase Kinase; domain 1 296 396 - -
Viun6g01399 640 Pfam Salt stress response/antifungal 35 128 IPR002902 -
Viun6g01399 640 Pfam Salt stress response/antifungal 160 237 IPR002902 -
Viun6g01399 640 ProSiteProfiles Protein kinase domain profile. 320 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01399 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Viun6g01399 640 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Viun6g01399 640 SMART serkin_6 320 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01399 640 SUPERFAMILY Protein kinase-like (PK-like) 303 592 IPR011009 -
Viun6g01399 640 FunFam Cysteine-rich receptor-like protein kinase 2 27 131 - -
Viun6g01399 640 FunFam Cysteine-rich receptor-like protein kinase 2 397 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01399 Viun-Chr6 22604201 22609396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01399 11 640 Receptor kinase-like Gene Family AT1G70520 37.405 1.30e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g01399 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01399 - - gmx:100801131 973