Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01397 ATGTTAGGACTGAAACTATTGGCGTTAACTTTGATATGGTGGAGCTGTAGTGTTGAACATGCAGATGCAGCAACACCGAAAACACGTCTAATAAACACTGGGTGCAGCCCATTCAACGCTTCCAACGCCCACAGCTTCTTCGCAAATATCAATGATACATTTTCAGAGATGAGAGCAGAAGTTACCAACCAAACCAAACACTTTGCCACATCACAGAAATCAAGGGGAGGGATCCTCACATATACAATGTTTCAATGCCGAAACTATCTCTCCAAAAATGATTGTCTTTCTTGCTTCGACACCGCCTCCACCCAAATCCGCAACTGCTCCAAAGCCAATGGCGCAAGAGTTATCTACAACGATTGCTTCCTCAGGTACGAGAGCGAGAGGTTCTACCAACAGACCAATGAGCTTGGCGGTGGGGTAACGTGTGGGAACACCAGTTTGAAAACCACTCGTGATTTTAAAGTTGTCGGACAACAAGCACTCGCGGAGATTCAAACAGCAACACCTAAAACTAAAGGGTTTTATGCAGCTACCAAGACACAGGTGGATGATGGTTCTGCAATTTATGCCATTGCACAGTGCGTCGAAACTGCAACCGAGGATAAATGTCTGAGTTGCATGCAAGTTGCATACAACAACTTACTGAGTTGTCTTCCCAACACTGATGGGACAGCATATGATGCTGGCTGTTTTATGAGATACTCCACCACACCTTTCTTTGCTGCTAATCAAACCATTGATATTGGATCCTATTTAAAAACAGGAAGTTCAAGAAAGAAGTGGGGAATTATAGGTGGTGTTGTAGGAGGTTTTCTTCTCCTCCTTCTGTTGTTTGTCTGGAGAATGTCTAGAAAAAGAAACAAGGTTCACAGAGGTGACATATTGGGAGCAACCGAGTTAAGAGGACCAGTTAACTACAAATATAATGACTTGAAAGCTGCAACTAAAAATTTCAGTGTTGAAAATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTAAAGAATGGAAAAATTGTTGCCATAAAGAAATTAGTGCTGGGAAAATCAAGCAAGATGGAGGATGATTTTGAGGGTGAAGTGAAACTTATAAGCAATGTTCATCATCGGAATCTCGTTAGACTTCTTGGTTGCTGCAGTAAAGGGGAAGAAAGAATTCTGGTATACGAGTACATGGCAAATAGTAGCCTTGACAGATTCTTATTTGGTGCTAAAGGTTCCCTCAATTGGCAACAACGTTATGATATAATTCTGGGCACAGCAAGAGGACTAGCATATCTACATGAAGAGTTCCATGTGTCCATCATTCATAGAGATATAAAGACAGGTAACATCCTGCTAGATGATGATCTTCAACCCAAAATTGCTGATTTTGGTTTGGCAAGGCTTCTGCCAGGGGATCGTTCCCATCTCAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATGCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTATGGAATTGTAGTTCTAGAAATTATAAGTGGTCATAAGAGTACTGATGTGAAGAATGAGGAGGAAGGTCGTGAATACCTTCTGCAACGAGCTTGGAAACTGTATGAGAGAGGCATGCAGTTGGAGCTTGTGGACGAGGCCATAGATCCTAATGAGTATGATGCAGAAGAAGTAAAGAAAATCATAGAAATTGCGTTGTTGTGCACTCAGGCATCTGCAGCAACGAGACCAACAATGTCTGAAGTAGTGGTGCTACTGAAAAGCAAGAGCTTGATGGAGAACATGCGACCAACTATGCCTGTGTTTGTTGACACCAATATGATAAATAGGGAAGGCAACTCTGCTACTTCATCCAATGCCACTGTCTCCATTTCTGTTCTATCAGCTCGATGA 1908 0.423 MLGLKLLALTLIWWSCSVEHADAATPKTRLINTGCSPFNASNAHSFFANINDTFSEMRAEVTNQTKHFATSQKSRGGILTYTMFQCRNYLSKNDCLSCFDTASTQIRNCSKANGARVIYNDCFLRYESERFYQQTNELGGGVTCGNTSLKTTRDFKVVGQQALAEIQTATPKTKGFYAATKTQVDDGSAIYAIAQCVETATEDKCLSCMQVAYNNLLSCLPNTDGTAYDAGCFMRYSTTPFFAANQTIDIGSYLKTGSSRKKWGIIGGVVGGFLLLLLLFVWRMSRKRNKVHRGDILGATELRGPVNYKYNDLKAATKNFSVENKLGEGGFGAVYKGTLKNGKIVAIKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGEERILVYEYMANSSLDRFLFGAKGSLNWQQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPGDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIISGHKSTDVKNEEEGREYLLQRAWKLYERGMQLELVDEAIDPNEYDAEEVKKIIEIALLCTQASAATRPTMSEVVVLLKSKSLMENMRPTMPVFVDTNMINREGNSATSSNATVSISVLSAR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01397 635 ProSiteProfiles Gnk2-homologous domain profile. 137 241 IPR002902 -
Viun6g01397 635 Gene3D - 141 241 IPR038408 -
Viun6g01397 635 Gene3D - 27 131 IPR038408 -
Viun6g01397 635 Pfam Salt stress response/antifungal 150 238 IPR002902 -
Viun6g01397 635 Pfam Salt stress response/antifungal 39 128 IPR002902 -
Viun6g01397 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Viun6g01397 635 Pfam Protein kinase domain 321 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01397 635 FunFam Cysteine-rich receptor-like protein kinase 2 139 241 - -
Viun6g01397 635 Gene3D Phosphorylase Kinase; domain 1 283 396 - -
Viun6g01397 635 FunFam Cysteine-rich receptor-like protein kinase 2 27 131 - -
Viun6g01397 635 ProSitePatterns Protein kinases ATP-binding region signature. 326 349 IPR017441 GO:0005524
Viun6g01397 635 SMART serkin_6 320 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01397 635 CDD STKc_IRAK 326 592 - -
Viun6g01397 635 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Viun6g01397 635 FunFam Cysteine-rich receptor-like protein kinase 2 397 599 - -
Viun6g01397 635 SUPERFAMILY Protein kinase-like (PK-like) 303 591 IPR011009 -
Viun6g01397 635 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 81 618 - -
Viun6g01397 635 Gene3D Transferase(Phosphotransferase) domain 1 397 608 - -
Viun6g01397 635 ProSiteProfiles Protein kinase domain profile. 320 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01397 635 FunFam Cysteine-rich receptor-like protein kinase 2 285 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01397 Viun-Chr6 22592010 22595193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01397 27 635 Receptor kinase-like Gene Family AT1G70520 36.635 3.13e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g01397 Pkinase 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01397 - - gmx:112997608 1016.91