Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01396 ATGGCGGAAGTGAAGGTTGTAGGGTTGACCTTGTTGTGGTTGTGGTCATGGTGGAGCTTAGAGGGCGTAGAAGGAGACCCTCAAACCTTTCTGCTGAAATGGGATTGCAGCGGATTCATGGTAACCAACTTATCCAACTTCAACAAAAACCTTAACGCAACTTTCGCAGATCTGCGAGCACACCTCACCAACCAAACCAACTACTTTGCCACGGCGCAAGCAACCACCGGAACAGATCCTGTCTATGCCATGTTTCAGTGCAGAAACTACCTCTCCCACACCGACTGCGCCACCTGCTTCGCCGCCGCCGTCACCAAAATTCGCAACTGCTCCGCCGGATCCAACGGTGCCCGTGTCATTTACGATGGTTGCTTCCTCAGGTACGAGAGCAGCGACTTCTTCGACCAGATCTTTTCTCGCAGCAGCATGCTCTGTGGAAATCAGAGTGCAGATGGAAGCACTGATTTTAGCGCAGTGGGAGAACAACTTCTGATAGATCTACGAACAGCAACACCCAAAATCAGAGGCTACTTTGCAGCTACCAAGACAAAAATGGCCATTGGTTCAATCTATGCCTTTGCACAATGTGCAGAAACTCTCTCACAAGACACTTGTTTGGATTGTTTGTCAGATGAACAGACCAGTGTACAAGGTTGTCTTCCTAGTACTGATGGCAGAGCATTCGACCCTGGCTGCTTTATGAGATACTCGGAGACACCCTTCTTTGCTGATAACCAAACCGTTGATATCACTCCCTTCTTAAAACAAGGAGGAGGTTCAAACAGGAAGTGGTTTGTTATTGGTGGTTGTGTTGGAGGTGCACTTCTTCTTGTGATCCTTATATCATTATTTCCCTGGATTAGGAGATCCCAAAGTCCCATGAGAGTTCCCACAAGTAACGTATTGGGAGCTTCTGAGTTGAAAGGTGCAACCAAGTTCAAGTATAGTGAGTTGAAAGCTGCAACAAGAAATTTTAGTGAGAAAAACATTCTAGGAGAAGGAGGGTTTGGCGCTGTATACAAGGGGACAATGAAGAATGGAAAAATTGTTGCAGTCAAAAAATTATTTTCAGGGAAATCCAGCGAGATAGATGAGAATTTTGAAAGTGAAGTAACGCTTGTAAGTAATGTTCATCACAGAAATCTGGTTCGGCTTCTTGGTTGCTGCAGTAAAGGCCAAGAAAAAATCCTTGTTTACGAATACATGGCAAACAACAGTCTTGACAAATTCTTATTCGGTAACAGAAAAGGTTCCCTCAACTGGAAACAACGCTATGAAATAATTTTGGGAACAGCGAGGGGATTGACATATCTACATGAGGAATTTTATGTGTCTATCATACACAGAGACATCAAGAGTGGCAATATCCTCTTGGATGAACAACTTCAACCCAAAATTTCTGATTTTGGTTTGGTGAAGCTGCTACCAGGGGACCAATCCCATCTCAGAACAAAAGTTGCTGGAACATTGGGATACACAGCACCCGAGTATGTACTCCATGGTCAGTTATCAAAAAAGGCTGATACATACAGCTATGGAATTGTAGTGCTTGAAATCATAAGTGGTCAAAGGTGTACCGATGTGAACACTCTTGATGGTAGCCATGAATACCTTCTTCGACGAGCATGGAACTTGTACGAGAAAGGCATGCAGTTGGAGTTGGTGGAGAAAAACTTAAGCCCTAATAGCTATGATAGAGAAGAAGTGAAGAAAGTTATCGACATTGCTTTGTTGTGCACTCAACCATCGGCTGGTATGAGACCAGCTATGTCTGAAGTAGTGGTGCTGCTGAGTAGCAGTGAGTTTCTTGAGCATATGAGACCTTCGATGCCTATCTTTATTGACTCCAATGGAAGGCCCCCAAGAGATATCTCTGCCTCAACTGCTTCCTCTGTGTCTAATGCTAGTGTTTCCAATTCTATAGTACCTGCTAGATGA 1938 0.4438 MAEVKVVGLTLLWLWSWWSLEGVEGDPQTFLLKWDCSGFMVTNLSNFNKNLNATFADLRAHLTNQTNYFATAQATTGTDPVYAMFQCRNYLSHTDCATCFAAAVTKIRNCSAGSNGARVIYDGCFLRYESSDFFDQIFSRSSMLCGNQSADGSTDFSAVGEQLLIDLRTATPKIRGYFAATKTKMAIGSIYAFAQCAETLSQDTCLDCLSDEQTSVQGCLPSTDGRAFDPGCFMRYSETPFFADNQTVDITPFLKQGGGSNRKWFVIGGCVGGALLLVILISLFPWIRRSQSPMRVPTSNVLGASELKGATKFKYSELKAATRNFSEKNILGEGGFGAVYKGTMKNGKIVAVKKLFSGKSSEIDENFESEVTLVSNVHHRNLVRLLGCCSKGQEKILVYEYMANNSLDKFLFGNRKGSLNWKQRYEIILGTARGLTYLHEEFYVSIIHRDIKSGNILLDEQLQPKISDFGLVKLLPGDQSHLRTKVAGTLGYTAPEYVLHGQLSKKADTYSYGIVVLEIISGQRCTDVNTLDGSHEYLLRRAWNLYEKGMQLELVEKNLSPNSYDREEVKKVIDIALLCTQPSAGMRPAMSEVVVLLSSSEFLEHMRPSMPIFIDSNGRPPRDISASTASSVSNASVSNSIVPAR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01396 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Viun6g01396 645 Pfam Salt stress response/antifungal 42 130 IPR002902 -
Viun6g01396 645 Pfam Salt stress response/antifungal 150 238 IPR002902 -
Viun6g01396 645 Gene3D Transferase(Phosphotransferase) domain 1 402 607 - -
Viun6g01396 645 FunFam Cysteine-rich receptor-like protein kinase 2 290 401 - -
Viun6g01396 645 FunFam Cysteine-rich receptor-like protein kinase 2 402 605 - -
Viun6g01396 645 FunFam Cysteine-rich receptor-like protein kinase 2 28 133 - -
Viun6g01396 645 ProSiteProfiles Gnk2-homologous domain profile. 138 241 IPR002902 -
Viun6g01396 645 Gene3D Phosphorylase Kinase; domain 1 292 401 - -
Viun6g01396 645 FunFam Cysteine-rich receptor-like protein kinase 2 140 241 - -
Viun6g01396 645 SMART serkin_6 325 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01396 645 ProSiteProfiles Protein kinase domain profile. 325 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01396 645 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Viun6g01396 645 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 620 - -
Viun6g01396 645 CDD STKc_IRAK 331 594 - -
Viun6g01396 645 Gene3D - 139 241 IPR038408 -
Viun6g01396 645 Gene3D - 29 133 IPR038408 -
Viun6g01396 645 MobiDBLite consensus disorder prediction 623 645 - -
Viun6g01396 645 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Viun6g01396 645 Pfam Protein kinase domain 326 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01396 645 SUPERFAMILY Protein kinase-like (PK-like) 310 614 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01396 Viun-Chr6 22582542 22586668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01396 9 640 Receptor kinase-like Gene Family AT1G70520 38.117 1.95e-129 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g01396 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01396 - - var:108341533 995.342