Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01394 ATGCTGAAACTTGAGCTACTAGTAATAATAACCTTGATATGCTGGAGCTCTGATAATATTCATGCATACGGTGCAGTTGAAAATATACAGACAAATCTACTGAACAAGGGGTGCAGCGCATACAACGCATCCAACTTGCGTAGCTTCTTTGCCAATATCAATGAAACTTTTGAAGGCCTTAGAGCTCAAATTAGCAGTGATAATAAGAACAAGCACTTTGCCGTAGAAGATAAAGCTAGGGGAGAGGTGATGACATATGCTATGTTTCAATGCAGAAACTATCTCTCCAAAACTCAATGTCTTTCTTGCTTCAACACTGCCACCTCCCAAATCCGCAACTGCTCCGCTGCTAACGGCGCCAGAATCACATACGACTCCTGCTTCCTCAGGTATGAGAGCGACAGGTTCTACGATGAAACCAATGAACCTGGCGGTGGTGTATCATGTGGGAACACGAGTTCAACTGTCACTGGTTTTACAGTAGCTGGACAACAAGTGTTAATGGAGCTCCTGCGAGCAACTCCAAAAATTAAGGGTTTTTATGCAGCTACAAAGACACCTGTTGCTGGTGGTAGTGCAATTTATGCCGTTTCACAGTGTGTTGAAACTGCCATGAAGACTAGTTGTCTGAACTGCTTAGAAGTTGCATACAACAACTTACAACGTTGTCTTCCTAACACAGATGGGACAGCATATGATGCTGGCTGTTTTATGAGATACTCCGCCACACCTTTGTTTGCAGATAATCAGACTATTGATATTGCACCCTTTTTAAAACAAGGTTCAACGAAGAAGTGGGGTATTATAGGTGGTGTTGTTATTGGAGCTGTTCTTCTGCTCCTTGTGTTGTTTGCTTGGAGATGGTTTAGAAAATCAAAGGGTGTTCAAAGAGCTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCTGCAACAAAAAAGTTCAGTGCTGAAAACAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAAGGTACTCTGAAAAATGGAAAAGTTGTTGCCGTAAAAAAACTAGTGTTGGGGAAATCAAGCAAGATGAAGGATGATTTTGAAGGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGGAATCTCGTTAGACTTCTTGGATGCTGCAGCAAAGGCCAAGAGAGAATCTTGGTTTATGAGTATATGGCAAATAGCAGCCTTGACAGATTCTTATTCGGTAACAGAAAAGGTTTCCTAAATTGGAAACAACGGTATAATATAATTTTAGGCACAGCAAAGGGACTAGCATATCTACACGAGGAATTCCACGTGTCCATCATACATAGAGATATCAAGACTGCTAATATCCTGTTAAATGATGATCTTCAGCCAAAAATTGCTGATTTTGGGTTGGCGAGGCTTCTCCCAGAGGATTGTTCTCATCTCAGCACAAAATTTGCAGGAACATTAGGATACACAGCACCTGAGTATGCAATGCATGGCCAATTATCAGAGAAGGCTGATACCTACAGCTATGGCATTGTAGTGTTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGGGTGATGAGGAGGCCAGTGAATATCTTCTTCAACGATCATGGAAACTGTACGAGAGAGGGTCTCACCTGGAGCTGTTGGAAGAGGCCATAGAGGCTGATGAATATGATGCGGAAGAAGTGAAGAGAATAATAGAAATTGCTTTATTATGCACTCAGGCAACAGCTGCAGCGAGGCCAACAATGTCTGAAGTAGTAGTATTACTCAAAACCAAGAACTCAGTGGACCACCTGCGACCAACTATGCCTGTGTTTGTTGGAACCAATGTCATGACTCGGGAAGGAAACTCTACTAGTTCATCTAATGCTAATGCTTCCATTTCTATTGTATCAGCTCGATGA 1923 0.416 MLKLELLVIITLICWSSDNIHAYGAVENIQTNLLNKGCSAYNASNLRSFFANINETFEGLRAQISSDNKNKHFAVEDKARGEVMTYAMFQCRNYLSKTQCLSCFNTATSQIRNCSAANGARITYDSCFLRYESDRFYDETNEPGGGVSCGNTSSTVTGFTVAGQQVLMELLRATPKIKGFYAATKTPVAGGSAIYAVSQCVETAMKTSCLNCLEVAYNNLQRCLPNTDGTAYDAGCFMRYSATPLFADNQTIDIAPFLKQGSTKKWGIIGGVVIGAVLLLLVLFAWRWFRKSKGVQRADILGATELKGPVNYKYNDLKAATKKFSAENKLGEGGFGAVYKGTLKNGKVVAVKKLVLGKSSKMKDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGNRKGFLNWKQRYNIILGTAKGLAYLHEEFHVSIIHRDIKTANILLNDDLQPKIADFGLARLLPEDCSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIISGQKSTDVKGDEEASEYLLQRSWKLYERGSHLELLEEAIEADEYDAEEVKRIIEIALLCTQATAAARPTMSEVVVLLKTKNSVDHLRPTMPVFVGTNVMTREGNSTSSSNANASISIVSAR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01394 640 CDD STKc_IRAK 330 597 - -
Viun6g01394 640 Gene3D - 147 244 IPR038408 -
Viun6g01394 640 Gene3D - 29 136 IPR038408 -
Viun6g01394 640 ProSiteProfiles Gnk2-homologous domain profile. 141 245 IPR002902 -
Viun6g01394 640 Pfam Protein kinase domain 325 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01394 640 FunFam Cysteine-rich receptor-like protein kinase 2 401 604 - -
Viun6g01394 640 ProSitePatterns Protein kinases ATP-binding region signature. 330 353 IPR017441 GO:0005524
Viun6g01394 640 FunFam Cysteine-rich receptor-like protein kinase 2 290 400 - -
Viun6g01394 640 FunFam Cysteine-rich receptor-like protein kinase 2 144 245 - -
Viun6g01394 640 Gene3D Transferase(Phosphotransferase) domain 1 401 608 - -
Viun6g01394 640 Gene3D Phosphorylase Kinase; domain 1 290 400 - -
Viun6g01394 640 Pfam Salt stress response/antifungal 42 133 IPR002902 -
Viun6g01394 640 Pfam Salt stress response/antifungal 157 242 IPR002902 -
Viun6g01394 640 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Viun6g01394 640 SMART serkin_6 324 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01394 640 ProSiteProfiles Protein kinase domain profile. 324 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01394 640 MobiDBLite consensus disorder prediction 620 640 - -
Viun6g01394 640 SUPERFAMILY Protein kinase-like (PK-like) 312 625 IPR011009 -
Viun6g01394 640 Coils Coil 551 571 - -
Viun6g01394 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Viun6g01394 640 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 86 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01394 Viun-Chr6 22570154 22573159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01394 38 638 Receptor kinase-like Gene Family AT1G70520 37.379 2.67e-127 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g01394 Pkinase 2.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01394 - - vra:106775622 1100.5