Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01393 ATGATATCTGGGTTCATGTCGTGGTGTTGGTTTTCCTCGGTGACGAACATGGTGGTGCAAGTGCATCTCAGTACTCTCCTACCCTTAACTGTGTTCATCTTATTATGGAGCCTTGAGGGTGCCATAGGAGACCCTCAAATTCTTCTGCTGAACAAGGGTTGTAGCCAATACAACGCCACGGATTTGTCCACTTTCAACCAAAATCTGAACGCAACTTTGGATGATCTCAGAGTTCAAGTTACCAACCAAAGCAAGCACTTTGCCACGGCTCAAGAAGCTAGAGGACAAGACCCTGTCTATGCCATGTTCCAATGTAGAAACTACCTCTCTACCACCGACTGCGCCGCCTGCTTCGCCGCCGCCGCCGCCCAAATCCGCAACTGCTCCGCCGGGGCCAACGGTGCCCGTGTCATCTATGACGGTTGCTTCCTCAGGTATGAGAGTGCTGGCTTCTTAGACCAGACAACTTTGCCTGGGAACAGTATGATTTGTGGAAATCAGACAGCAGTTGGAGCCACTGATTTTAACACAACTGCACAGCAAGTGCTGAAGGATCTGCAAATTGCAACTCCCAAAATCACAGGTTTCTTTGCAGCTACCAAGACACAAGTGGCTGGTGCTGCAATCTATGCCATTGCACAATGTGCTGAAACTGTCTCAGAGAGTGGTTGTCTGGATTGCCTCACAGTTGGATACAACAATATTCATGTTTGTTTACCTAATACAGAGGGAAGAGCCTTTGATGCTGGCTGTTTTATGAGATATTCAGAGACAGCCTTTTTTTCTGATAACCAGACCATTGATATCACACCCTTCTTGCAACAAGGGAGTTCAAGCAAAAAGGGGGCTATTATTGGTGGGGTTGTTGGAGGTGTAGCTCTTATTGTAATCCTCCTTGCACTAGTTGCATTGCTTAGATGGTACAAGAAACCCAAGAAGGTTCGAAGAGGTAACATATTGGGAGCAACAGACTTGAAAGGTCCAGTTTCCTTCAGGTATAAGGATTTGAAGGCTGCAACAAAAAATTTCAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGGAAGATAGTTGCAGTGAAGAAATTAATTTTAGGACCATCCGGGAAGGTCGATGATCAATTTGAAAGTGAAGTGAAGCTTATAAGCAATGTTCATCACAGGAATCTAGTTCGACTCCTTGGATGTTGCAGCAAAGGCCAAGAAAGAATCCTTGTTTATGAATACATGGCAAATAAAAGCTTGGATAGATTCTTATTCGGTGAAGGAAATGATTCCCTCAGTTGGAAACAAAGATATGACATAATTTTAGGCACAGCAAAGGGTTTGGCTTATCTGCATGAGGATTTCCACGTTTGCATCATACATAGGGATATAAAAACTAGCAATATCCTCTTGGATGATGAAATGCAACCAAGAATCGCTGATTTTGGGTTGGCAAGACTTCTACCAGAGGACCAATCTCATCTCAGCACAAGATTTGCAGGAACATTAGGATACACAGCACCAGAGTATGCAATCCATGGTCAGTTATCAGAGAAGGCTGATGCCTACAGCTTTGGTGTTGTACTTCTAGAAATCGTAAGTGGCCAAAAGAATAGTGAACTGAGGGCAGATGCTAATGGTGAATTCCTCCTTCAAAGGGCATGGAAGCTGTATGAGGAAAACATGCATTTGGAGTTGGTTGACAAGAAATTGGATCCTGCAGAGTATGAGGCAGAAGAAGTGAAGAAAGTGATAGAGATTGCTTTGCTTTGCATTCAAGCATCAGCTGGTGCAAGGCCAACAATGTCTGAAGTAGTGGCCTCACTGAAAAGCAAGAATTCATTAGGGCAAACTAGGCCTTCTATGCCTGTATTTGTTGAATCTAACTTGAGGACTAGGGCAGCTGACACCTCTACCTCAACTGGTTCCTCCACATCTAATGCTACTGCTTCAATTTCTATGCCCTCAGCTCGATGA 1992 0.4413 MISGFMSWCWFSSVTNMVVQVHLSTLLPLTVFILLWSLEGAIGDPQILLLNKGCSQYNATDLSTFNQNLNATLDDLRVQVTNQSKHFATAQEARGQDPVYAMFQCRNYLSTTDCAACFAAAAAQIRNCSAGANGARVIYDGCFLRYESAGFLDQTTLPGNSMICGNQTAVGATDFNTTAQQVLKDLQIATPKITGFFAATKTQVAGAAIYAIAQCAETVSESGCLDCLTVGYNNIHVCLPNTEGRAFDAGCFMRYSETAFFSDNQTIDITPFLQQGSSSKKGAIIGGVVGGVALIVILLALVALLRWYKKPKKVRRGNILGATDLKGPVSFRYKDLKAATKNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLILGPSGKVDDQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANKSLDRFLFGEGNDSLSWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDEMQPRIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSFGVVLLEIVSGQKNSELRADANGEFLLQRAWKLYEENMHLELVDKKLDPAEYEAEEVKKVIEIALLCIQASAGARPTMSEVVASLKSKNSLGQTRPSMPVFVESNLRTRAADTSTSTGSSTSNATASISMPSAR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01393 663 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 100 650 - -
Viun6g01393 663 SMART serkin_6 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01393 663 FunFam Cysteine-rich receptor-like protein kinase 2 309 419 - -
Viun6g01393 663 Gene3D Phosphorylase Kinase; domain 1 310 419 - -
Viun6g01393 663 ProSiteProfiles Protein kinase domain profile. 343 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01393 663 ProSiteProfiles Gnk2-homologous domain profile. 47 151 IPR002902 -
Viun6g01393 663 ProSiteProfiles Gnk2-homologous domain profile. 157 260 IPR002902 -
Viun6g01393 663 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Viun6g01393 663 MobiDBLite consensus disorder prediction 638 663 - -
Viun6g01393 663 Pfam Salt stress response/antifungal 169 257 IPR002902 -
Viun6g01393 663 Pfam Salt stress response/antifungal 54 148 IPR002902 -
Viun6g01393 663 FunFam Cysteine-rich receptor-like protein kinase 2 159 260 - -
Viun6g01393 663 FunFam Cysteine-rich receptor-like protein kinase 2 46 151 - -
Viun6g01393 663 Pfam Protein kinase domain 344 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01393 663 CDD STKc_IRAK 349 615 - -
Viun6g01393 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Viun6g01393 663 Gene3D Transferase(Phosphotransferase) domain 1 420 628 - -
Viun6g01393 663 FunFam Cysteine-rich receptor-like protein kinase 2 420 622 - -
Viun6g01393 663 Gene3D - 47 151 IPR038408 -
Viun6g01393 663 Gene3D - 160 260 IPR038408 -
Viun6g01393 663 SUPERFAMILY Protein kinase-like (PK-like) 327 625 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01393 Viun-Chr6 22559007 22565213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01393 21 658 Receptor kinase-like Gene Family AT1G70520 37.037 6.66e-131 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g01393 Pkinase 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01393 - - vra:106775622 1080.47