Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01390 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGACTTGAAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTAATTTGTCAACTGCACAATGTTACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCTTTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGAATTCCCAGTAAGCAGCCATCAAATTATTTTTGCAAGACATTAACAGCCAGTGATACCAGTACACATGGAGGATTCTCTGTTCCTCGCCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCAGCACAGGAACTGATTGCCAAGGATCTGCATGATGTTGAATGGAAATTTCGGCATATTTTTCGAGGACAGCCGAAACGGCACCTCCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTCGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGACGTGCCAATAGACCACAAACTGTAATGCCATCATCGGTTCTATCCAGTGACAGCATGCACATTGGACTTCTTGCCGCTGCTGCCCATGCTGCAGCGACCAATAGCTGTTTTACCGTGTTTTATAATCCGAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTATTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTGACAACATTCCCTATGTATCCATCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGAGATGAAGCAAGTAATGGACTGATGTGGCTGAGGGGTGGACCTGTTGAACAAGGTCTCAATTCGCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGAATGGATCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCTGCTGGGTTGCAGAATCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTTTGCAACTTCAGCCGCAGCAATCAGTTCAACAATCTGTGTCTTCTAACATGCTGCAGCCACAACAAGCCCATGTACTGACAGAAAACCTCTCTCAGCACCTACTTCAGAAGCCACACAACAATCAAGAAGTCCAAGCACAACAGCAGCAGCATTCTTATCAAGAATCGCTCTTGATTCCAAGTGATCAGCTCCATCAGAGACAACACTCCGGCGTTCCTTCACCGTCGTATTCTAAACCAGATTTCTTGGATCCGAGCATGAAGTTCCCTGCTTCTGTTTCCCCCGGACAAAACATGCTTAGTTCACTTTGTCCTGAAGGAAGTGGAAATCTCTTGAATTTATCAAGGAGTGGTCCTTCCTTGCTGAGTGAACAGTTACCTCAACAGCAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCTTATGGAAGCACTGTGTCGCAGACACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGATGCCCAAAATTCAACTGTATTTGGTGTCAATATCGATTCATCTGGCCTTCTTCTTCCCACCACAGTCCCTGGTTACAGCACCTCATCTGCGGATACTAATTCATCAACAATGCCACTAGGGGAGTCTGGTTTCCAGGGTTCTCTATTTGGTTGCATGCAAGATTCGTCAGAGTTGTTGCAAAGTGCAGGGCATGTTGACCCACAAAACCAAACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCAGTTGGGCGCTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGTGAGGAATTGGCTCAGATGTTTGGAATTGAGGGAAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCAGTGGAATCCCTTGCTCTAGGTTCAGGACAGAGGCTCAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGAATACTGA 2532 0.4609 MKLSTSGLGQQGLEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIAKDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEASNGLMWLRGGPVEQGLNSLNFQGAGMLPWMQQRMDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQPQQSVQQSVSSNMLQPQQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSYQESLLIPSDQLHQRQHSGVPSPSYSKPDFLDPSMKFPASVSPGQNMLSSLCPEGSGNLLNLSRSGPSLLSEQLPQQQWTQKYAPVQVNAYGSTVSQTQYSGKDSAMVLPHLNSDAQNSTVFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01390 843 Pfam AUX/IAA family 713 801 IPR033389 -
Viun6g01390 843 MobiDBLite consensus disorder prediction 469 499 - -
Viun6g01390 843 MobiDBLite consensus disorder prediction 821 835 - -
Viun6g01390 843 FunFam Auxin response factor 125 229 - -
Viun6g01390 843 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun6g01390 843 FunFam Auxin response factor 291 363 - -
Viun6g01390 843 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Viun6g01390 843 SUPERFAMILY CAD & PB1 domains 712 791 - -
Viun6g01390 843 Gene3D - 125 228 IPR015300 -
Viun6g01390 843 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Viun6g01390 843 FunFam Auxin response factor 712 806 - -
Viun6g01390 843 MobiDBLite consensus disorder prediction 542 563 - -
Viun6g01390 843 ProSiteProfiles PB1 domain profile. 717 801 IPR000270 GO:0005515
Viun6g01390 843 Gene3D - 291 363 - -
Viun6g01390 843 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Viun6g01390 843 CDD B3_DNA 126 227 IPR003340 GO:0003677
Viun6g01390 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 806 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun6g01390 843 SMART B3_2 127 229 IPR003340 GO:0003677
Viun6g01390 843 Gene3D - 713 806 - -
Viun6g01390 843 MobiDBLite consensus disorder prediction 821 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01390 Viun-Chr6 22541045 22547913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01390 97 809 B3 DNA Binding Superfamily AT5G37020 67.497 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun6g01390 AUX_IAA 2.7e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01390 6 22541045 22547913 Viun6g01390 6 22541045 22547913 ECH
Viun6g01390 6 22541045 22547913 Viun8g02063 8 31137595 31147928 PCT