Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01341 ATGGAGACCGTTCCCTCTGTTCTCAAGAAATATTTTGGTTTTTCAAATTTTCGGCCTTACCAGAGAGAAGTTATTGAGAAAATTATTGAGAGAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGATACCTCCCTTGGTTGTTGAAAAGACTGGGATAGTTGTGAGCCCTTTGATATCGTTGATGCAAGACCAGGTGATGGCTTTAAAACAACGAGGTATTAGAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACGTGGTCAATTTGACATTCTGTTCATGACTCCTGAAAAGGCATGCACAGTTCCTACCAGTTTTTGGTCCAACTTACTAAATGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGACAAGTTACGTAAGGTCTTGGTTGATGTTCCTTTTGTTGGTCTAACTGCGACTGCCACTGAAAAGGTTCGATTTGACATCATCAGTTCCCTGAAGATGGATAACCCTTATGTTACGATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACAATTGAACCGTGGACAATCTTTTATTGATGAGCTTGTGCGGGAAATTTCAAAAGAAGTTGCTACTGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGGTATTCAAGTCATTTACAGAAGCAGGCATTGCGGCAGGAATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAAAGTCTAGAATCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTACTGTGGAGATGTAAAATCAGAAAAACAAAGAAAAGCTATTATGGAGTCATTGCTTGCTGCTGAACGCTATTGTGTGCTGACAACATGCAGAAGAAAGTTTTTGCTTGAATACTTTGGGGAAAAAGTTTCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAGTCTCAAAGAAGGAGCGAGACATGTCAAGGGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAACGGTAGATGGGGTCTTAATATGCCTATTGATGTCCTGCGCGGGTCTCGAGCCAAGAAAATTCTTGAGGTTCAGTTTGATAAGCTTCCACTTCATGGGCTGGGGAAAAATTATCCAGCAAATTGGTGGAAATCACTTGGGCATCAATTGATTTCTCAAGGTTATCTGAAGGAGACTGTTAGTGACGTATACAGAACTATAAGTGTCAGTTCAAAAGGAGAGCAGTTTTTGGCCTCTTCAAGACCAGATTATCAACCTCCTTTAGTTTTGACATTGACTGCGGACATGCTTGGAGAAGAAGATAATGGAAACACACAAGACGAATTCAAAGCTTTATCCACTTCAGAATTAGATGGTTTTTCAGAGGCTGAGAGAAAGCTCCACCAAATGCTTTTGGAAGAAAGATTAGAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGCGATCAAACGATCAGGAAAATTGCATTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTAATGGTGTAAATCAGCACCTAGTGACGAAATATGGAGATCATTTTCTTCAAGTTATTCGGAAACTGTCACAAGGACTAAACCTATCATTGGACGGGGAAGAAAGGGTCCCAATGGCTAGTTTGCAAACTAATGAAGTAAAGAAAGTGTCTCCACTAACCAACAAATCCAAGAAGTTGACATCAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTGTTCATGATATTGCTAACTTAGAAGTTAGATCGGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTGCTGGAAGCTGCCCAAGAAGGATTACCATTTGATTGGGTTAGATTCAGCAAGATGATAGGACTGACACAAGAGATCATGTCAGAAATTCAGGGTGCCATTTCAAAAGTTGGATCTACAGACAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGATATAAGTTATCAGCACATCAAGACTTATTTGTCAATGCGAAACTGTGGTATATCCTTGGAAACAAATCAGTCTGGAAGTAACCAGACCGGGAAAGATGAACTTACACACAATGCCTCAAATTTGTCAGACTGTACTTTAGAAACATGTCCTGACAGGCAATGTGAAGATGACATTTCGGTAAAAAGTTTCGCTGAACAACGTGACTTAGAAATGGATGAGGTACCTTCTTTACCTGTCAACAGTTCTGAGGAACATAAGCTTTTAAATGCTAGTGAAGGGGAATTCACAAGAAAACGACAAAAGGTCAGTGAAACGAAGGAAGTAAACTCAACTAGATTGGAGGCTACAGTGAGTTCTGTTGTAGAGTGGATGAACAACCTTGATGAAGGGGCTACGTTGAACAATATTTTGGAACACTTCAACGGATCCAGTGAAGATTCTGTGGTTGAACTGCTAAATTGCCTAGAGTGTGACTTTTTAATATATAGGAAAGGGAACGTGTATAGGGTTTTGTAA 2751 0.4017 METVPSVLKKYFGFSNFRPYQREVIEKIIERRDCLVVMATGSGKSLCYQIPPLVVEKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACTVPTSFWSNLLNAGISLFAVDEAHCISEWGHDFRVEYKHLDKLRKVLVDVPFVGLTATATEKVRFDIISSLKMDNPYVTIGSFDRTNLFYGVKQLNRGQSFIDELVREISKEVATGGSTIIYCTTIKDVEQVFKSFTEAGIAAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAIMESLLAAERYCVLTTCRRKFLLEYFGEKVSADRCGNCDNCKVSKKERDMSREAFLLMACIHSCNGRWGLNMPIDVLRGSRAKKILEVQFDKLPLHGLGKNYPANWWKSLGHQLISQGYLKETVSDVYRTISVSSKGEQFLASSRPDYQPPLVLTLTADMLGEEDNGNTQDEFKALSTSELDGFSEAERKLHQMLLEERLELARSVGTAPYAICGDQTIRKIALTRPSTKARLANINGVNQHLVTKYGDHFLQVIRKLSQGLNLSLDGEERVPMASLQTNEVKKVSPLTNKSKKLTSAKFEAWKMWHEDGLSVHDIANLEVRSAPIKEQTVAEYLLEAAQEGLPFDWVRFSKMIGLTQEIMSEIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSMRNCGISLETNQSGSNQTGKDELTHNASNLSDCTLETCPDRQCEDDISVKSFAEQRDLEMDEVPSLPVNSSEEHKLLNASEGEFTRKRQKVSETKEVNSTRLEATVSSVVEWMNNLDEGATLNNILEHFNGSSEDSVVELLNCLECDFLIYRKGNVYRVL 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01341 916 Gene3D - 200 401 IPR027417 -
Viun6g01341 916 SMART hrdc7 543 623 IPR002121 GO:0003676
Viun6g01341 916 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Viun6g01341 916 CDD DEXHc_RecQ 6 199 - -
Viun6g01341 916 CDD SF2_C_RecQ 200 335 - -
Viun6g01341 916 Pfam Helix-turn-helix domain 659 755 IPR029491 -
Viun6g01341 916 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 370 IPR001650 -
Viun6g01341 916 FunFam ATP-dependent DNA helicase 200 401 - -
Viun6g01341 916 FunFam ATP-dependent DNA helicase 539 628 - -
Viun6g01341 916 Pfam HRDC domain 548 613 IPR002121 GO:0003676
Viun6g01341 916 SUPERFAMILY HRDC-like 542 618 IPR010997 GO:0000166|GO:0044237
Viun6g01341 916 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Viun6g01341 916 SMART ultradead3 13 210 IPR014001 -
Viun6g01341 916 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Viun6g01341 916 ProSiteProfiles HRDC domain profile. 543 623 IPR002121 GO:0003676
Viun6g01341 916 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Viun6g01341 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Viun6g01341 916 Gene3D - 402 524 IPR036388 -
Viun6g01341 916 Pfam RQC domain 404 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Viun6g01341 916 Gene3D HRDC domain 542 622 IPR044876 -
Viun6g01341 916 Pfam RecQ zinc-binding 349 400 IPR032284 -
Viun6g01341 916 FunFam ATP-dependent DNA helicase 1 198 - -
Viun6g01341 916 Gene3D - 1 198 IPR027417 -
Viun6g01341 916 FunFam ATP-dependent DNA helicase 402 526 - -
Viun6g01341 916 NCBIfam RecQ family ATP-dependent DNA helicase 6 458 IPR004589 GO:0004386|GO:0006310
Viun6g01341 916 SMART helicmild6 245 326 IPR001650 -
Viun6g01341 916 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 696 - -
Viun6g01341 916 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01341 Viun-Chr6 22374753 22388686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01341 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 22.126 2.30e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01341 K03654 - gmx:100797777 1605.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01341 6 22374753 22388686 Viun6g01341 6 22374753 22388686 ECH