Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01340 ATGGAGACCGTTCCCTCTGTTCTCAAGAAATATTTTGGTTTTTCAAATTTTCGGCCTTACCAGAGAGAAGTTATTGAGAAAATTATTGAGAGAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGATACCTCCCTTGGTTGTTGAAAAGACTGGGATAGTTGTGAGCCCTTTGATATCGTTGATGCAAGACCAGGTGATGGCTTTAAAACAACGAGGTATTAGAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACGTGGTCAATTTGACATTCTGTTCATGACTCCTGAAAAGGCATGCACAGTTCCTACCAGTTTTTGGTCCAACTTACTAAATGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGACAAGTTACGTAAGGTCTTGGTTGATGTTCCTTTTGTTGGTCTAACTGCGACTGCCACTGAAAAGGTTCGATTTGACATCATCAGTTCCCTGAAGATGGATAACCCTTATGTTACGATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACAATTGAACCGTGGACAATCTTTTATTGATGAGCTTGTGCGGGAAATTTCAAAAGAAGTTGCTACTGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGGTATTCAAGTCATTTACAGAAGCAGGCATTGCGGCAGGAATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAAAGTCTAGAATCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTACTGTGGAGATGAAAAACAAAGAAAAGCTATTATGGAGTCATTGCTTGCTGCTGAACGCTATTGTGTGCTGACAACATGCAGAAGAAAGTTTTTGCTTGAATACTTTGGGGAAAAAGTTTCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAGTCTCAAAGAAGGAGCGAGACATGTCAAGGGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAACGGTAGATGGGGTCTTAATATGCCTATTGATGTCCTGCGCGGGTCTCGAGCCAAGAAAATTCTTGAGGTTCAGTTTGATAAGCTTCCACTTCATGGGCTGGGGAAAAATTATCCAGCAAATTGGTGGAAATCACTTGGGCATCAATTGATTTCTCAAGGTTATCTGAAGGAGACTGTTAGTGACGTATACAGAACTATAAGTGTCAGTTCAAAAGGAGAGCAGTTTTTGGCCTCTTCAAGACCAGATTATCAACCTCCTTTAGTTTTGACATTGACTGCGGACATGCTTGGAGAAGAAGATAATGGAAACACACAAGACGAATTCAAAGCTTTATCCACTTCAGAATTAGATGGTTTTTCAGAGGCTGAGAGAAAGCTCCACCAAATGCTTTTGGAAGAAAGATTAGAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGCGATCAAACGATCAGGAAAATTGCATTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTAATGGTGTAAATCAGCACCTAGTGACGAAATATGGAGATCATTTTCTTCAAGTTATTCGGAAACTGTCACAAGGACTAAACCTATCATTGGACGGGGAAGAAAGGGTCCCAATGGCTAGTTTGCAAACTAATGAAGTAAAGAAAGTGTCTCCACTAACCAACAAATCCAAGAAGTTGACATCAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTGTTCATGATATTGCTAACTTAGAAGTTAGATCGGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTGCTGGAAGCTGCCCAAGAAGGATTACCATTTGATTGGGTTAGATTCAGCAAGATGATAGGACTGACACAAGAGATCATGTCAGAAATTCAGGGTGCCATTTCAAAAGTTGGATCTACAGACAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGATATAAGTTATCAGCACATCAAGACTTATTTGTCAATGCGAAACTGTGGTATATCCTTGGAAACAAATCAGTCTGGAAGTAACCAGACCGGGAAAGATGAACTTACACACAATGCCTCAAATTTGTCAGACTGTACTTTAGAAACATGTCCTGACAGGCAATGTGAAGATGACATTTCGGTAAAAAGTTTCGCTGAACAACGTGACTTAGAAATGGATGAGGTACCTTCTTTACCTGTCAACAGTTCTGAGGAACATAAGCTTTTAAATGCTAGTGAAGGGGAATTCACAAGAAAACGACAAAAGGTCAGTGAAACGAAGGAAGTAAACTCAACTAGATTGGAGGCTACAGTGAGTTCTGTTGTAGAGTGGATGAACAACCTTGATGAAGGGGCTACGTTGAACAATATTTTGGAACACTTCAACGGATCCAGTGAAGATTCTGTGGTTGAACTGCTAAATTGCCTAGAGTGTGACTTTTTAATATATAGGAAAGGGAACGTGTATAGGGTTTTGTAA 2742 0.4023 METVPSVLKKYFGFSNFRPYQREVIEKIIERRDCLVVMATGSGKSLCYQIPPLVVEKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACTVPTSFWSNLLNAGISLFAVDEAHCISEWGHDFRVEYKHLDKLRKVLVDVPFVGLTATATEKVRFDIISSLKMDNPYVTIGSFDRTNLFYGVKQLNRGQSFIDELVREISKEVATGGSTIIYCTTIKDVEQVFKSFTEAGIAAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDEKQRKAIMESLLAAERYCVLTTCRRKFLLEYFGEKVSADRCGNCDNCKVSKKERDMSREAFLLMACIHSCNGRWGLNMPIDVLRGSRAKKILEVQFDKLPLHGLGKNYPANWWKSLGHQLISQGYLKETVSDVYRTISVSSKGEQFLASSRPDYQPPLVLTLTADMLGEEDNGNTQDEFKALSTSELDGFSEAERKLHQMLLEERLELARSVGTAPYAICGDQTIRKIALTRPSTKARLANINGVNQHLVTKYGDHFLQVIRKLSQGLNLSLDGEERVPMASLQTNEVKKVSPLTNKSKKLTSAKFEAWKMWHEDGLSVHDIANLEVRSAPIKEQTVAEYLLEAAQEGLPFDWVRFSKMIGLTQEIMSEIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSMRNCGISLETNQSGSNQTGKDELTHNASNLSDCTLETCPDRQCEDDISVKSFAEQRDLEMDEVPSLPVNSSEEHKLLNASEGEFTRKRQKVSETKEVNSTRLEATVSSVVEWMNNLDEGATLNNILEHFNGSSEDSVVELLNCLECDFLIYRKGNVYRVL 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01340 913 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Viun6g01340 913 CDD DEXHc_RecQ 6 199 - -
Viun6g01340 913 CDD SF2_C_RecQ 200 335 - -
Viun6g01340 913 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Viun6g01340 913 Gene3D - 200 398 IPR027417 -
Viun6g01340 913 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Viun6g01340 913 FunFam ATP-dependent DNA helicase 536 625 - -
Viun6g01340 913 Gene3D HRDC domain 539 619 IPR044876 -
Viun6g01340 913 SUPERFAMILY HRDC-like 539 615 IPR010997 GO:0000166|GO:0044237
Viun6g01340 913 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Viun6g01340 913 NCBIfam RecQ family ATP-dependent DNA helicase 6 455 IPR004589 GO:0004386|GO:0006310
Viun6g01340 913 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Viun6g01340 913 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 693 - -
Viun6g01340 913 FunFam ATP-dependent DNA helicase 200 398 - -
Viun6g01340 913 SMART ultradead3 13 210 IPR014001 -
Viun6g01340 913 Pfam RQC domain 401 498 IPR018982 GO:0006260|GO:0006281|GO:0043138
Viun6g01340 913 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Viun6g01340 913 Gene3D - 399 521 IPR036388 -
Viun6g01340 913 SMART hrdc7 540 620 IPR002121 GO:0003676
Viun6g01340 913 Pfam RecQ zinc-binding 347 397 IPR032284 -
Viun6g01340 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Viun6g01340 913 FunFam ATP-dependent DNA helicase 1 198 - -
Viun6g01340 913 Gene3D - 1 198 IPR027417 -
Viun6g01340 913 SMART helicmild6 245 326 IPR001650 -
Viun6g01340 913 FunFam ATP-dependent DNA helicase 399 523 - -
Viun6g01340 913 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 376 IPR001650 -
Viun6g01340 913 Pfam Helix-turn-helix domain 656 752 IPR029491 -
Viun6g01340 913 SUPERFAMILY "Winged helix" DNA-binding domain 395 501 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01340 Viun-Chr6 22374752 22388686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01340 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 22.126 2.43e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01340 K03654 - gmx:100797777 1594.71