Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01314 ATGTATCTTTCAAAGAGTTTCAAGCATGAAGTCGTTGTCATCCTGTGGTTTTGCTGCTATTTGCTACATGCTTCTGGGCAGAATAACATCACTAGTTATGTTGAAGTTGAAGCATTGAGAGCCATTAAGAGTAGTTTGATTGATCCTAATGGAAATTTGAGCAATTGGCATCATGGAGACCCATGTACATCAGGGTGGAAAGGAGTTTTGTGCTTCAATGAAACACAAGAGGATGGCTATCTGCATGTTCAAGAATTGCAATTACTGAGTTTGCAACTGTCTGGAACCTTGGCACCAGATCTTGGCAAATTAACATACATGCAAAGATTGAACTTTATGTGGAACAACATAAGTGGCAGTATTCCGAAGGAAGTTGGCAATATCAAATCCTTGGAACTTTTGCTCCTGAATGGAAATAATTTAACAGGTCCGCTACCAGAGGAGATTGGCTATCTTCCAAACCTGGATAGAATACAAATCGACCAGAACCATATATCAGGACCTATACCTACGTCATTTGCAAATCTGAACAAGACAAAGCATTTTCACATGAACAACAACTCACTCAGCGGACAAATTCCACCGGAGCTTTCCCAGTTACCAAATCTTGTTCACCTTCTTCTCGACAATAACAACTTATCTGGTTTTCTCCCCCCTGAGCTGTACAAGATGCCAAAGTTACTTATCATTCAACTTGATAACAATAACTTTGAAGGAAATAGTATTCCTGATACGTATGGCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAGTTTGACAGGACCAGTTCCTGACTTAAGCAGGATACCTCACCTTCTTTATCTTGACCTCAGTTTCAACCAGTTGAACGAATCGATTCCTGCCAATAAGCTTTCTGAAAATATCACAACCATTGATTTATCAAACAACCGCCTAACTGGAAATATTCCATCTTACTTTGATGATCTTCCAAGTCTTCAAAAGTTGTCACTTGCAAACAATTCATTGAATGGAAGTGTTTCTTCCTCTATTTGGACGAATAAGACTTCAAATGGAACAGAAAACTTTCTTGTGGAGTTGCAAAATAATAACCTTACAGTCATATCAGGAACTACTGATCTTCCTCCAAACGTCACAGTTGTGCTTGATGGGAATCCCCTTTGCCCAAACATAACCCTTGCTAAGTTCTGTGGATCTGAAGGTGCTACTGTAACAAATGGCTCATTCACTACAAACTCCATTTCATGTCAACCTCAAGCATGTCCTCCTCCTTATGAGTACTCTGTTGATTGTTTCTGTGCACTTCCATTGCTTGTTGCCTATCGGCTGAAAAGTCCTGGATTTTCCGACTTTATTCCGTATTTGGATGATTTTGAGACCTACATGACTACTGGTCTTCAATTATCTACTGATCAGCTAGAATATACTTTTTATTGGCAAGCAGGACCTCGATTGAGAATGGACTTGAAATTTTTTCCTCTATATGTTAATAACACTAGCAATCATACTTTCAATAGAAGTGAGCTCCTACGGATCACAAGCATGTTCACAGGATGGCTAATTCAAGACAGTGATCTGTTTGGACCTTATGAACTGCTTGGCTTCGATCTTTTGGGTCCTTACAAGGATGAAATTGGCAAGGATTCAAAATCAGGAATAAGCACAGGTGCACTGGTTGGCATAGTTGTAGGGGCAATTGCCTGTGCAGTGACATTATCAGCAATTGTTACCCTTCTTATATTGAGAATCAAAATGAGAGGTTATCATACTGTTTCCAAGCGGCGTCAGGCATCTAAGATATCTATAAAAATTGATGGTGTAAGGGACTTTACTTATGGAGAATTGTCCTCCGCCACAAACAATTTCAGCACTTCTGCTCAAGTTGGACAAGGTGGCTATGGGAAGGTTTATAAAGGGACTCTTTCTGATGGCACAGTTGTTGCCATAAAACGCGCACAAGAGGGATCTCTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTTGTTTCTCTGCTTGGATACTGTGACGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCTAATGGCACATTGAGGGATCACCTTTCTGTTACAGCGAAAGAACCCCTGAGTTTTGCCATGAGATTGAAGATTGCACTAGGGGCAGCTAAAGGTCTCGTGTATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTAAAGGCCAGCAACATTTTGTTAGACTCTAAACTTTCAGCGAAAGTGGCTGATTTTGGACTTTCTCGTCTTGCCCCAGTTCCAGATATGGAAGGAGTTGTGCCTGGTCATGTATCTACGGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACGCACAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTGTTTCTGGAACTTTTGACTGGGATGCATCCTATCTCACATGGAAAAAATATTGTTAGAGAGGTTAATATTGCGTACCAATCAGGTGTAATATTTTCAATTATTGATGGACGCATGGGGTCTTATCCATCTGAGCATGTGGAGAAATTTTTGACATTGGCCTTGAAGTGTTGCGAAGATGAACCAGAGGCACGACCTAGAATGGCAGAAGTGGTTAGAGAGCTTGAAAACATATGGTCTACAATGCCAGAATCAGATACCAAGAAAGCTGAATTTATGTCCAGTGATTCTGGCAAAACAGACAGTCACAGTATACCATCTTCATCCTCTTCTGCTATGAAGACTCCTTTTGTATCAGGAGATGTGTCTGGTAGTGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2853 0.4069 MYLSKSFKHEVVVILWFCCYLLHASGQNNITSYVEVEALRAIKSSLIDPNGNLSNWHHGDPCTSGWKGVLCFNETQEDGYLHVQELQLLSLQLSGTLAPDLGKLTYMQRLNFMWNNISGSIPKEVGNIKSLELLLLNGNNLTGPLPEEIGYLPNLDRIQIDQNHISGPIPTSFANLNKTKHFHMNNNSLSGQIPPELSQLPNLVHLLLDNNNLSGFLPPELYKMPKLLIIQLDNNNFEGNSIPDTYGNMSKLLKMSLRNCSLTGPVPDLSRIPHLLYLDLSFNQLNESIPANKLSENITTIDLSNNRLTGNIPSYFDDLPSLQKLSLANNSLNGSVSSSIWTNKTSNGTENFLVELQNNNLTVISGTTDLPPNVTVVLDGNPLCPNITLAKFCGSEGATVTNGSFTTNSISCQPQACPPPYEYSVDCFCALPLLVAYRLKSPGFSDFIPYLDDFETYMTTGLQLSTDQLEYTFYWQAGPRLRMDLKFFPLYVNNTSNHTFNRSELLRITSMFTGWLIQDSDLFGPYELLGFDLLGPYKDEIGKDSKSGISTGALVGIVVGAIACAVTLSAIVTLLILRIKMRGYHTVSKRRQASKISIKIDGVRDFTYGELSSATNNFSTSAQVGQGGYGKVYKGTLSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLLGYCDEEGEQMLVYEFMSNGTLRDHLSVTAKEPLSFAMRLKIALGAAKGLVYLHTEADPPIFHRDVKASNILLDSKLSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNIAYQSGVIFSIIDGRMGSYPSEHVEKFLTLALKCCEDEPEARPRMAEVVRELENIWSTMPESDTKKAEFMSSDSGKTDSHSIPSSSSSAMKTPFVSGDVSGSDLVSGVIPSIKPR 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01314 950 Pfam Protein kinase domain 619 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01314 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Viun6g01314 950 SMART serkin_6 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01314 950 MobiDBLite consensus disorder prediction 898 950 - -
Viun6g01314 950 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 191 - -
Viun6g01314 950 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Viun6g01314 950 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 694 903 - -
Viun6g01314 950 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Viun6g01314 950 SUPERFAMILY L domain-like 44 392 - -
Viun6g01314 950 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 192 294 - -
Viun6g01314 950 SUPERFAMILY Protein kinase-like (PK-like) 604 918 IPR011009 -
Viun6g01314 950 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Viun6g01314 950 Gene3D Ribonuclease Inhibitor 32 295 IPR032675 -
Viun6g01314 950 SMART LRR_typ_2 128 152 IPR003591 -
Viun6g01314 950 SMART LRR_typ_2 200 224 IPR003591 -
Viun6g01314 950 SMART LRR_typ_2 272 297 IPR003591 -
Viun6g01314 950 SMART LRR_typ_2 319 343 IPR003591 -
Viun6g01314 950 ProSiteProfiles Protein kinase domain profile. 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01314 950 Gene3D Transferase(Phosphotransferase) domain 1 694 913 - -
Viun6g01314 950 PANTHER RECEPTOR-LIKE PROTEIN 55 42 891 - -
Viun6g01314 950 Gene3D Ribonuclease Inhibitor 296 384 IPR032675 -
Viun6g01314 950 FunFam Leucine-rich repeat protein kinase family protein 583 693 - -
Viun6g01314 950 CDD STKc_IRAK 624 890 - -
Viun6g01314 950 MobiDBLite consensus disorder prediction 909 930 - -
Viun6g01314 950 CDD JMTM_APP_like 538 578 - -
Viun6g01314 950 Gene3D Phosphorylase Kinase; domain 1 588 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01314 Viun-Chr6 22165610 22178240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01314 18 900 Receptor kinase-like Gene Family AT5G01950 59.375 0.0 1005
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Viun6g01314 PK_Tyr_Ser-Thr 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01314 - - gmx:100786467 1629.77