Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01306 ATGAGTGACACAAACCAACCTTTCATGTCCCTCCAACCAACCATGAATCTCCGCCACCCATTTAACCCACCAACCTCAAGCTCTAATTTTTACACCCACCCACCATGCAAAACCCCCAAAAAACCCCAACCACCGCACAAGAAGCTCCTCCGAGTCATCCTCACCGACCACGACGCCACCGACTCAGACTCCTCCGGCGACGATGAAAGCCCCCAAAACCCCTCAAAACACAAAAAAGTGAAAAGAGAAATCACCCACATCACCATAAACTTTCCCTTTGTCCCAGAACCCCCAACCGTAACCCCTTCTTTTTCCACTAACCCGACCCCGTTAACCCAACCCGAGAAGCGGCCCGCCGCCCCTCGCCGCCGGAACAAGTTCCGAGGTGTCCGACAGAGACCATGGGGACGATGGACCGCCGAGATCCGCGACCCGACCCAAAGAAAACGGGTCTGGCTCGGCACCTTCGACACGGCGGAGGAAGCAGCCGCCGTGTACGACGAGGCCGCCGTGAAGCTCAAGGGGCCTGACGCTGTCACCAACTTCCCCCTCGCCGCTACTGGAAAAAGAGAACTCCGCGTTTCGCCCCCGGAGGCGGCCTGCTCCGGTGACGGTTTCTCGTCGCCGACGTCTGTCCTCACTTACTGCGACGGAGACTCCTCGCCGTTTGACGGTTTCCGTTTCGGCGAGGTCGATGCATTCGGGTTTGACATCGACGCGCCGTTTAGTCTGACGGACGTTAACATGGGCGTGCTGAATCAGCGCTACGCGAAGGAAGAGTTCGGCGAGTTTGACCCGGACGAGTTCCTGACGTGGCCAAATTAA 825 0.5794 MSDTNQPFMSLQPTMNLRHPFNPPTSSSNFYTHPPCKTPKKPQPPHKKLLRVILTDHDATDSDSSGDDESPQNPSKHKKVKREITHITINFPFVPEPPTVTPSFSTNPTPLTQPEKRPAAPRRRNKFRGVRQRPWGRWTAEIRDPTQRKRVWLGTFDTAEEAAAVYDEAAVKLKGPDAVTNFPLAATGKRELRVSPPEAACSGDGFSSPTSVLTYCDGDSSPFDGFRFGEVDAFGFDIDAPFSLTDVNMGVLNQRYAKEEFGEFDPDEFLTWPN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01306 274 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Viun6g01306 274 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Viun6g01306 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 47 215 - -
Viun6g01306 274 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Viun6g01306 274 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Viun6g01306 274 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Viun6g01306 274 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Viun6g01306 274 CDD AP2 126 183 IPR001471 GO:0003700|GO:0006355
Viun6g01306 274 MobiDBLite consensus disorder prediction 1 34 - -
Viun6g01306 274 MobiDBLite consensus disorder prediction 1 130 - -
Viun6g01306 274 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Viun6g01306 274 PIRSF PTI6 21 274 IPR017392 GO:0003700
Viun6g01306 274 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01306 Viun-Chr6 22108767 22110328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01306 8 215 AP2-EREBP Transcription Factor Family AT4G27950 40.265 7.33e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun6g01306 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01306 K13434 - gmx:102660028 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01306 6 22108767 22110328 Viun6g01306 6 22108767 22110328 ECH